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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281393 (15 seq.)
>W1711342438
MCHF01000006
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
136
212
+
Ile
GAT
[ENA]
¡û
>W141088284
AUUR01000090
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
4077
4001
-
Ile
GAT
[ENA]
¡û
>W141246586
CANE01000062
Bacillota
Dehalobacter restrictus E1 [CANE]
582
506
-
Ile
GAT
[ENA]
¡û
>W141246619
CANF01000062
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
9
85
+
Ile
GAT
[ENA]
¡û
>WENV170561084
CZCA01002695
[CZCA] anaerobic digester metagenome; anaerobic digester
1826
1902
+
Ile
GAT
[ENA]
¢þ
>WENV170644131
JMBV01043842
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
116
40
-
Ile
GAT
[ENA]
¢þ
>C141011729
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
337058
337134
+
Ile
GAT
[Ensembl]
¡û
>W1911608721
PNXX01000019
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
349
273
-
Ile
GAT
[ENA]
¡û
>W1911613576
POSF01000022
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
1501
1577
+
Ile
GAT
[ENA]
¡û
>C151016299
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
93723
93799
+
Ile
GAT
[Ensembl]
¡û
>C11120620
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
287702
287778
+
Ile
GAT
[Ensembl]
¡û
>C11120657
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
2164676
2164600
-
Ile
GAT
[Ensembl]
¡û
>W11181439
AGJB01000035
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
214
290
+
Ile
GAT
[ENA]
¡û
>C131008553
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
1959852
1959776
-
Ile
GAT
[Ensembl]
¡û
>C131008604
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
1989633
1989557
-
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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