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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281406 (55 seq.)
>W1711283076
LZOF01000048
Spirochaetota
Brachyspira hampsonii [LZOF]
11017
11089
+
Val
TAC
[ENA]
¡û
>W1711283098
LZOG01000110
Spirochaetota
Brachyspira hampsonii [LZOG]
11685
11613
-
Val
TAC
[ENA]
¡û
>W1711307498
MAOX01000034
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
13782
13854
+
Val
TAC
[ENA]
¡û
>W1711307505
MAOY01000002
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
35045
35117
+
Val
TAC
[ENA]
¡û
>W1711351563
MDCO01000012
Spirochaetota
Brachyspira hampsonii [MDCO]
140817
140889
+
Val
TAC
[ENA]
¡û
>W1711507063
MKXF01000039
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
13659
13731
+
Val
TAC
[ENA]
¡û
>W131093656
AOMM01000388
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
7065
7137
+
Val
TAC
[ENA]
¡û
>W131182378
ARQI01000090
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
2799
2871
+
Val
TAC
[ENA]
¡û
>W131184492
ARSY01000033
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
32748
32820
+
Val
TAC
[ENA]
¡û
>WENV180116976
OARB01001760
[OARB] human gut metagenome; ENVO:feces
221
293
+
Val
TAC
[ENA]
¢þ
>WENV180117803
OARM01000089
[OARM] human gut metagenome; ENVO:feces
25666
25594
-
Val
TAC
[ENA]
¢þ
>W141037634
ALNZ01000022
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
135467
135395
-
Val
TAC
[ENA]
¡û
>WENV181665960
OGOJ01010584
[OGOJ] human gut metagenome; faeces
742
814
+
Val
TAC
[ENA]
¢þ
>WENV181704773
OGPK01000869
[OGPK] human gut metagenome; faeces
4734
4806
+
Val
TAC
[ENA]
¢þ
>W141275721
JADF01000007
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
201073
201001
-
Val
TAC
[ENA]
¡û
>WENV182964373
OKWR01001557
[OKWR] human gut metagenome; human gut
10001
9929
-
Val
TAC
[ENA]
¢þ
>WENV183384293
OLYN01002106
[OLYN] human gut metagenome; feces
4728
4656
-
Val
TAC
[ENA]
¢þ
>WENV183423457
OMBG01001738
[OMBG] human gut metagenome; feces
5235
5163
-
Val
TAC
[ENA]
¢þ
>WENV183447204
OMCS01002696
[OMCS] human gut metagenome; feces
2561
2489
-
Val
TAC
[ENA]
¢þ
>WENV183648585
OQVS01020908
[OQVS] human gut metagenome; human gut
215
287
+
Val
TAC
[ENA]
¢þ
>W09108420
ABTG01000002
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
562902
562974
+
Val
TAC
[ENA]
¡û
>C181038061
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
1475081
1475153
+
Val
TAC
-
¡û
>C191017000
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
1305983
1305911
-
Val
TAC
-
¡û
>W1910000005
AFQM01000005
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
27071
27143
+
Val
TAC
[ENA]
¡û
>W1910569151
JJMJ01000230
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
10272
10200
-
Val
TAC
[ENA]
¡û
>W1910569220
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
556884
556812
-
Val
TAC
[ENA]
¡û
>W1910574890
JQIU01000008
Spirochaetota
Brachyspira sp. G79 [JQIU]
1782382
1782310
-
Val
TAC
[ENA]
¡û
>C09102332
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
1723663
1723735
+
Val
TAC
[Ensembl]
¡û
>C10101940
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
1225340
1225412
+
Val
TAC
[Ensembl]
¡û
>C10101978
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
1584968
1585040
+
Val
TAC
[Ensembl]
¡û
>C11103113
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
2900065
2900137
+
Val
TAC
[Ensembl]
¡û
>W1510641514
CVLB01000002
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
359300
359372
+
Val
TAC
[ENA]
¡û
>W1511506945
JXNA01000059
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
10569
10497
-
Val
TAC
[ENA]
¡û
>W1511506977
JXNB01000061
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
42099
42171
+
Val
TAC
[ENA]
¡û
>W1511506996
JXNC01000014
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
10231
10159
-
Val
TAC
[ENA]
¡û
>W1511507032
JXND01000019
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
6980
7052
+
Val
TAC
[ENA]
¡û
>W1511507058
JXNE01000009
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
10240
10168
-
Val
TAC
[ENA]
¡û
>W1511507113
JXNF01000068
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
29510
29438
-
Val
TAC
[ENA]
¡û
>W1511507137
JXNG01000032
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
11561
11489
-
Val
TAC
[ENA]
¡û
>W1511507163
JXNH01000032
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
13437
13365
-
Val
TAC
[ENA]
¡û
>W1511507194
JXNI01000034
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
32700
32772
+
Val
TAC
[ENA]
¡û
>W1511507215
JXNJ01000004
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
263627
263699
+
Val
TAC
[ENA]
¡û
>W1511507273
JXNK01000082
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
10860
10788
-
Val
TAC
[ENA]
¡û
>W1511507295
JXNL01000060
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
3372
3444
+
Val
TAC
[ENA]
¡û
>W1511507324
JXNM01000042
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
32703
32775
+
Val
TAC
[ENA]
¡û
>W1511507344
JXNN01000012
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
32702
32774
+
Val
TAC
[ENA]
¡û
>W1511507401
JXNO01000089
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
95941
95869
-
Val
TAC
[ENA]
¡û
>W1511507418
JXNP01000022
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
6979
7051
+
Val
TAC
[ENA]
¡û
>W1511507453
JXNQ01000028
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
10539
10467
-
Val
TAC
[ENA]
¡û
>W1511507489
JXNR01000060
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
30455
30383
-
Val
TAC
[ENA]
¡û
>W1511507527
JXNS01000167
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
42196
42268
+
Val
TAC
[ENA]
¡û
>C161092136
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
1996531
1996459
-
Val
TAC
[Ensembl]
¡û
>C131001500
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
1647577
1647505
-
Val
TAC
[Ensembl]
¡û
>C131003827
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
2553047
2552975
-
Val
TAC
[Ensembl]
¡û
>C131019646
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
285355
285427
+
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK