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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28144 (69 seq.)
>W1711125682
LUNP01000005
Alphaproteobacteria
Erythrobacter sp. REDSEA-S22_B4 [LUNP]
353021
353110
+
Ser
TGA
[ENA]
¡û
>W1711125733
LUNQ01000003
Alphaproteobacteria
Erythrobacter sp. REDSEA-S28_B2 [LUNQ]
661332
661243
-
Ser
TGA
[ENA]
¡û
>W1711125785
LUNR01000007
Alphaproteobacteria
Erythrobacter sp. REDSEA-S34_B3 [LUNR]
661610
661521
-
Ser
TGA
[ENA]
¡û
>W1711125814
LUNS01000055
Alphaproteobacteria
Erythrobacter sp. REDSEA-S36_B6 [LUNS]
21951
22040
+
Ser
TGA
[ENA]
¡û
>W1711125875
LUNT01000085
Alphaproteobacteria
Erythrobacter sp. REDSEA-S37_B3 [LUNT]
44228
44139
-
Ser
TGA
[ENA]
¡û
>W1711125902
LUNU01000003
Alphaproteobacteria
Erythrobacter sp. REDSEA-S40_B1 [LUNU]
661708
661619
-
Ser
TGA
[ENA]
¡û
>W1711125945
LUNV01000015
Alphaproteobacteria
Erythrobacter sp. REDSEA-S41_B1 [LUNV]
9849
9760
-
Ser
TGA
[ENA]
¡û
>W1711125998
LUNW01000009
Alphaproteobacteria
Erythrobacter sp. REDSEA-S42_B5 [LUNW]
352723
352812
+
Ser
TGA
[ENA]
¡û
>W1711126041
LUNX01000017
Alphaproteobacteria
Erythrobacter sp. REDSEA-S43_B2 [LUNX]
567469
567380
-
Ser
TGA
[ENA]
¡û
>W1711126071
LUNY01000097
Alphaproteobacteria
Erythrobacter sp. REDSEA-S45_B7 [LUNY]
9711
9622
-
Ser
TGA
[ENA]
¡û
>W1711176174
LWFF01000098
Alphaproteobacteria
Erythrobacter sp. HI0063 [LWFF]
16588
16677
+
Ser
TGA
[ENA]
¡û
>W1711284866
LZRP01000001
Alphaproteobacteria
Erythrobacter sp. QSSC1-22B [LZRP]
114916
114827
-
Ser
TGA
[ENA]
¡û
>C171072713
CP018097
Alphaproteobacteria
Aurantiacibacter gangjinensis CGMCC 1.15024 [CP018097, CP018098]
1992629
1992718
+
Ser
TGA
-
¡û
>w027531
ABCG01000001
Alphaproteobacteria
Erythrobacter sp. SD-21 [ABCG]
381008
380917
-
Ser
TGA
[ENA]
¡û
>WENV180108977
OAPI01050546
[OAPI] marine metagenome; ENVO.00002150
209
120
-
Ser
TGA
[ENA]
¡û
>WENV180361533
OBNV01066464
[OBNV] marine metagenome; ENVO:00002042
35
124
+
Ser
TGA
[ENA]
¡û
>WENV180587276
OCON01132503
[OCON] marine metagenome; seawater
5
94
+
Ser
TGA
[ENA]
¡û
>WENV180688206
OCZA010068180
[OCZA] marine metagenome; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
236
147
-
Ser
TGA
[ENA]
¡û
>WENV182546312
OJBO01008203
[OJBO] seawater metagenome; Sea water
238
149
-
Ser
TGA
[ENA]
¡û
>WENV182547934
OJBU01002582
[OJBU] seawater metagenome; Sea water
1650
1739
+
Ser
TGA
[ENA]
¡û
>WENV182549253
OJBY01000058
[OJBY] seawater metagenome; Sea water
34943
34854
-
Ser
TGA
[ENA]
¡û
>WENV182563833
OJED01000492
[OJED] seawater metagenome; Sea water
4026
3937
-
Ser
TGA
[ENA]
¡û
>WENV182563929
OJED01003632
[OJED] seawater metagenome; Sea water
1564
1475
-
Ser
TGA
[ENA]
¡û
>WENV183628559
OOGO01001102
[OOGO] marine metagenome; sea ice
92
181
+
Ser
TGA
[ENA]
¡û
>WENV183750055
PPFU01252369
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2555
2466
-
Ser
TGA
[ENA]
¡û
>WENV170266380
CERE01063155
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
529
618
+
Ser
TGA
[ENA]
¡û
>WENV170567275
FLLY01108837
[FLLY] seawater metagenome; seawater
213
302
+
Ser
TGA
[ENA]
¡û
>WENV170727319
LULE01000001
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
661708
661619
-
Ser
TGA
[ENA]
¡û
>WENV170728668
LULF01000108
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
20964
21053
+
Ser
TGA
[ENA]
¡û
>WENV170730465
LULH01000012
[LULH] marine metagenome; Red Sea water column Station 169 - depth 100m
44228
44139
-
Ser
TGA
[ENA]
¡û
>WENV170731450
LULI01000389
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
21951
22040
+
Ser
TGA
[ENA]
¡û
>WENV170732941
LULJ01002492
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
1934
1845
-
Ser
TGA
[ENA]
¡û
>WENV170733668
LULK01000001
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
661610
661521
-
Ser
TGA
[ENA]
¡û
>WENV170736091
LULL01041287
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
261
350
+
Ser
TGA
[ENA]
¡û
>WENV170737171
LULN01004693
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
3006
2917
-
Ser
TGA
[ENA]
¡û
>WENV170737404
LULO01000032
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
161191
161280
+
Ser
TGA
[ENA]
¡û
>WENV170739198
LULQ01000001
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
661332
661243
-
Ser
TGA
[ENA]
¡û
>WENV170743377
LULW01000001
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
353021
353110
+
Ser
TGA
[ENA]
¡û
>WENV170746174
LULZ01012261
[LULZ] marine metagenome; Red Sea water column Station 91 - depth 100m
784
873
+
Ser
TGA
[ENA]
¡û
>WENV170758820
LUMS01000011
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
9849
9760
-
Ser
TGA
[ENA]
¡û
>WENV170759531
LUMT01000003
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
352723
352812
+
Ser
TGA
[ENA]
¡û
>WENV170760711
LUMU01000005
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
567469
567380
-
Ser
TGA
[ENA]
¡û
>WENV170761490
LUMV01000595
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
14914
15003
+
Ser
TGA
[ENA]
¡û
>WENV170762009
LUMW01000407
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
9711
9622
-
Ser
TGA
[ENA]
¡û
>C181054532
CP021912
Alphaproteobacteria
Erythrobacter sp. KY5 [CP021912]
2135693
2135604
-
Ser
TGA
-
¡û
>C191007627
AP019389
Alphaproteobacteria
Qipengyuania flava KJ5 [AP019389]
1807299
1807210
-
Ser
TGA
-
¡û
>W2011208230
POYF01000010
Alphaproteobacteria
Erythrobacter sp. SAORIC-644 [POYF]
58956
59045
+
Ser
TGA
[ENA]
¡û
>W2012438751
WTYE01000001
Alphaproteobacteria
Erythrobacter jejuensis JCM 16677 [WTYE]
2306592
2306503
-
Ser
TGA
[ENA]
¡û
>W2012439162
WTYN01000001
Alphaproteobacteria
Altererythrobacter oceanensis MCCC 1A09965 [WTYN]
338976
338887
-
Ser
TGA
[ENA]
¡û
>W2012439434
WTYT01000001
Alphaproteobacteria
Altererythrobacter endophyticus LMG 29518 [WTYT]
399648
399559
-
Ser
TGA
[ENA]
¡û
>W2012440208
WUBR01000002
Alphaproteobacteria
Erythrobacter sp. GH3-10 [WUBR]
300662
300751
+
Ser
TGA
[ENA]
¡û
>W2110026110
BMID01000001
Alphaproteobacteria
Blastomonas marina CGMCC 1.15297 [BMID]
1159816
1159905
+
Ser
TGA
[ENA]
¡û
>W2110284324
JACXLC010000001
Alphaproteobacteria
Erythrobacter sp. KMU-140 [JACXLC]
1185764
1185853
+
Ser
TGA
[ENA]
¡û
>C201224630
CP049259
Alphaproteobacteria
Altererythrobacter sp. BO-6 [CP049259]
206405
206494
+
Ser
TGA
-
¡û
>C231317768
CP092471
Alphaproteobacteria
Qipengyuania sp. PHS-Z21 [CP092471]
2331312
2331223
-
Ser
TGA
-
¡û
>C231508238
CP107048
Alphaproteobacteria
Qipengyuania sp. SS22 [CP107048]
921212
921123
-
Ser
TGA
-
¡û
>C241286682
CP129106
Alphaproteobacteria
Alteriqipengyuania flavescens [CP129106]
2242776
2242865
+
Ser
TGA
-
¡û
>W1610936615
LUNP01000005
Alphaproteobacteria
Erythrobacter sp. REDSEA-S22_B4 [LUNP]
353021
353110
+
Ser
TGA
[ENA]
¡û
>W1610936666
LUNQ01000003
Alphaproteobacteria
Erythrobacter sp. REDSEA-S28_B2 [LUNQ]
661332
661243
-
Ser
TGA
[ENA]
¡û
>W1610936718
LUNR01000007
Alphaproteobacteria
Erythrobacter sp. REDSEA-S34_B3 [LUNR]
661610
661521
-
Ser
TGA
[ENA]
¡û
>W1610936747
LUNS01000055
Alphaproteobacteria
Erythrobacter sp. REDSEA-S36_B6 [LUNS]
21951
22040
+
Ser
TGA
[ENA]
¡û
>W1610936808
LUNT01000085
Alphaproteobacteria
Erythrobacter sp. REDSEA-S37_B3 [LUNT]
44228
44139
-
Ser
TGA
[ENA]
¡û
>W1610936835
LUNU01000003
Alphaproteobacteria
Erythrobacter sp. REDSEA-S40_B1 [LUNU]
661708
661619
-
Ser
TGA
[ENA]
¡û
>W1610936878
LUNV01000015
Alphaproteobacteria
Erythrobacter sp. REDSEA-S41_B1 [LUNV]
9849
9760
-
Ser
TGA
[ENA]
¡û
>W1610936931
LUNW01000009
Alphaproteobacteria
Erythrobacter sp. REDSEA-S42_B5 [LUNW]
352723
352812
+
Ser
TGA
[ENA]
¡û
>W1610936974
LUNX01000017
Alphaproteobacteria
Erythrobacter sp. REDSEA-S43_B2 [LUNX]
567469
567380
-
Ser
TGA
[ENA]
¡û
>W1610937004
LUNY01000097
Alphaproteobacteria
Erythrobacter sp. REDSEA-S45_B7 [LUNY]
9711
9622
-
Ser
TGA
[ENA]
¡û
>W1610984487
LWFF01000098
Alphaproteobacteria
Erythrobacter sp. HI0063 [LWFF]
16588
16677
+
Ser
TGA
[ENA]
¡û
>W1611042651
LZRP01000001
Alphaproteobacteria
Erythrobacter sp. QSSC1-22B [LZRP]
114916
114827
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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