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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281461 (71 seq.)
>W1711097968
LTJE01000019
Bacteroidota
Weeksella sp. HMSC059D05 [LTJE]
55129
55056
-
Lys
TTT
[ENA]
¡û
>W1711097970
LTJE01000019
Bacteroidota
Weeksella sp. HMSC059D05 [LTJE]
54926
54851
-
Lys
TTT
[ENA]
¡û
>W1711097971
LTJE01000019
Bacteroidota
Weeksella sp. HMSC059D05 [LTJE]
54798
54723
-
Lys
TTT
[ENA]
¡û
>W131181229
ARNT01000017
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
112475
112548
+
Lys
TTT
[ENA]
¡û
>W131181230
ARNT01000017
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
112643
112716
+
Lys
TTT
[ENA]
¡û
>W131181252
ARNT01000027
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
21
96
+
Lys
TTT
[ENA]
¡û
>WENV180285967
OBID01865187
[OBID] metagenome; sludge
60
133
+
Lys
TTT
[ENA]
¢þ
>WENV180733340
ODGY01128156
[ODGY] human metagenome; G_DNA_Supragingival plaque
2
74
+
Lys
TTT
[ENA]
¢þ
>WENV181158283
OEIH01000185
[OEIH] human metagenome; G_DNA_Supragingival plaque
8736
8663
-
Lys
TTT
[ENA]
¢þ
>W141266255
CCMH01000037
Bacteroidota
Weeksella massiliensis FF8 [CCMH]
179988
180061
+
Lys
TTT
[ENA]
¡û
>W141266257
CCMH01000037
Bacteroidota
Weeksella massiliensis FF8 [CCMH]
180194
180267
+
Lys
TTT
[ENA]
¡û
>W141266258
CCMH01000037
Bacteroidota
Weeksella massiliensis FF8 [CCMH]
180320
180395
+
Lys
TTT
[ENA]
¡û
>WENV183727246
PJTO01017098
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
797
724
-
Lys
TTT
[ENA]
¢þ
>WENV183727247
PJTO01017098
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
687
614
-
Lys
TTT
[ENA]
¢þ
>WENV183727325
PJTO01028302
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
78
5
-
Lys
TTT
[ENA]
¢þ
>WENV183727613
PJTP01000039
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
129213
129140
-
Lys
TTT
[ENA]
¢þ
>WENV183727615
PJTP01000039
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
129013
128940
-
Lys
TTT
[ENA]
¢þ
>WENV183727616
PJTP01000039
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
128903
128830
-
Lys
TTT
[ENA]
¢þ
>C191132756
CP034930
Bacteroidota
Apibacter raozihei HY041 [CP034930]
3036641
3036568
-
Lys
TTT
-
¡û
>C191132757
CP034930
Bacteroidota
Apibacter raozihei HY041 [CP034930]
3036513
3036440
-
Lys
TTT
-
¡û
>C191134773
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1842510
1842583
+
Lys
TTT
-
¡û
>C191134775
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
1842746
1842819
+
Lys
TTT
-
¡û
>C191210756
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
1283009
1282936
-
Lys
TTT
-
¡û
>C191210758
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
1282806
1282733
-
Lys
TTT
-
¡û
>C191210759
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
1282678
1282605
-
Lys
TTT
-
¡û
>W1810282716
PSZL01000022
Bacteroidota
Apibacter sp. wkB309 [PSZL]
636567
636494
-
Lys
TTT
[ENA]
¡û
>W1810282717
PSZL01000022
Bacteroidota
Apibacter sp. wkB309 [PSZL]
636455
636382
-
Lys
TTT
[ENA]
¡û
>W1810282751
PSZM01000043
Bacteroidota
Apibacter adventoris wkB301 [PSZM]
42664
42591
-
Lys
TTT
[ENA]
¡û
>W1810282752
PSZM01000043
Bacteroidota
Apibacter adventoris wkB301 [PSZM]
42549
42476
-
Lys
TTT
[ENA]
¡û
>W1810282767
PSZN01000004
Bacteroidota
Apibacter adventoris wkB180 [PSZN]
90677
90750
+
Lys
TTT
[ENA]
¡û
>W1810282768
PSZN01000004
Bacteroidota
Apibacter adventoris wkB180 [PSZN]
90794
90867
+
Lys
TTT
[ENA]
¡û
>C151013055
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
1529620
1529545
-
Lys
TTT
[Ensembl]
¡û
>C151013057
CP006828
Bacteroidota
Ornithobacterium rhinotracheale ORT-UMN 88 [CP006828]
1529389
1529316
-
Lys
TTT
[Ensembl]
¡û
>W1511391157
JSYQ01000012
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
22740
22813
+
Lys
TTT
[ENA]
¡û
>W1511391158
JSYQ01000012
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
22909
22984
+
Lys
TTT
[ENA]
¡û
>W1511391159
JSYQ01000012
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
23033
23108
+
Lys
TTT
[ENA]
¡û
>W1511391160
JSYQ01000012
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
23156
23231
+
Lys
TTT
[ENA]
¡û
>W1511391161
JSYQ01000012
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
23279
23354
+
Lys
TTT
[ENA]
¡û
>C11123804
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
1825388
1825461
+
Lys
TTT
[Ensembl]
¡û
>C11123806
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
1825591
1825666
+
Lys
TTT
[Ensembl]
¡û
>C11123807
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
1825719
1825794
+
Lys
TTT
[Ensembl]
¡û
>W11152343
AEXX01000020
Bacteroidota
Capnocytophaga sp. oral taxon 338 oral taxon 338 str. F0234 [AEXX]
17999
17926
-
Lys
TTT
[ENA]
¡û
>C121010282
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
1577979
1577904
-
Lys
TTT
[Ensembl]
¡û
>C121010284
CP003283
Bacteroidota
Ornithobacterium rhinotracheale DSM 15997 [CP003283]
1577748
1577675
-
Lys
TTT
[Ensembl]
¡û
>W1610029743
AXDE01000005
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
290989
290914
-
Lys
TTT
[ENA]
¡û
>W1610029745
AXDE01000005
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
290758
290685
-
Lys
TTT
[ENA]
¡û
>W1610207147
FCOR01000002
Bacteroidota
Apibacter mensalis R-53146 [FCOR]
179726
179653
-
Lys
TTT
[ENA]
¡û
>W1610207148
FCOR01000002
Bacteroidota
Apibacter mensalis R-53146 [FCOR]
179605
179532
-
Lys
TTT
[ENA]
¡û
>W1610503173
FLMR01000010
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
152645
152720
+
Lys
TTT
[ENA]
¡û
>W1610503175
FLMR01000010
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
152852
152927
+
Lys
TTT
[ENA]
¡û
>W1610503176
FLMR01000010
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
152988
153061
+
Lys
TTT
[ENA]
¡û
>W1610637934
LIVM01000002
Bacteroidota
Apibacter mensalis [LIVM]
179726
179653
-
Lys
TTT
[ENA]
¡û
>W1610637935
LIVM01000002
Bacteroidota
Apibacter mensalis [LIVM]
179605
179532
-
Lys
TTT
[ENA]
¡û
>W1710027113
AXDE01000005
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
290989
290914
-
Lys
TTT
[ENA]
¡û
>W1710027115
AXDE01000005
Bacteroidota
Ornithobacterium rhinotracheale H06-030791 [AXDE]
290758
290685
-
Lys
TTT
[ENA]
¡û
>W1710207841
FCOR01000002
Bacteroidota
Apibacter mensalis R-53146 [FCOR]
179726
179653
-
Lys
TTT
[ENA]
¡û
>W1710207842
FCOR01000002
Bacteroidota
Apibacter mensalis R-53146 [FCOR]
179605
179532
-
Lys
TTT
[ENA]
¡û
>W1710496407
FLMR01000010
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
152645
152720
+
Lys
TTT
[ENA]
¡û
>W1710496409
FLMR01000010
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
152852
152927
+
Lys
TTT
[ENA]
¡û
>W1710496410
FLMR01000010
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
152988
153061
+
Lys
TTT
[ENA]
¡û
>W1710570175
FOUZ01000002
Bacteroidota
Algoriella xinjiangensis [FOUZ]
261483
261558
+
Lys
TTT
[ENA]
¡û
>W1710570176
FOUZ01000002
Bacteroidota
Algoriella xinjiangensis [FOUZ]
261656
261731
+
Lys
TTT
[ENA]
¡û
>W1710570177
FOUZ01000002
Bacteroidota
Algoriella xinjiangensis [FOUZ]
261778
261853
+
Lys
TTT
[ENA]
¡û
>W1710570178
FOUZ01000002
Bacteroidota
Algoriella xinjiangensis [FOUZ]
261900
261975
+
Lys
TTT
[ENA]
¡û
>W1710570179
FOUZ01000002
Bacteroidota
Algoriella xinjiangensis [FOUZ]
262022
262097
+
Lys
TTT
[ENA]
¡û
>W1710590767
FRBH01000004
Bacteroidota
Chishuiella changwenlii [FRBH]
12786
12859
+
Lys
TTT
[ENA]
¡û
>W1710590768
FRBH01000004
Bacteroidota
Chishuiella changwenlii [FRBH]
12956
13031
+
Lys
TTT
[ENA]
¡û
>W1710590769
FRBH01000004
Bacteroidota
Chishuiella changwenlii [FRBH]
13080
13155
+
Lys
TTT
[ENA]
¡û
>W1710590770
FRBH01000004
Bacteroidota
Chishuiella changwenlii [FRBH]
13204
13279
+
Lys
TTT
[ENA]
¡û
>W1710772707
LIVM01000002
Bacteroidota
Apibacter mensalis [LIVM]
179726
179653
-
Lys
TTT
[ENA]
¡û
>W1710772708
LIVM01000002
Bacteroidota
Apibacter mensalis [LIVM]
179605
179532
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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