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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281472 (11 seq.)
>WENV180021928
FTFF01000714
[FTFF] metagenome; soil
16404
16478
+
Ala
GGC
[ENA]
¡û
>WENV180021929
FTFF01000714
[FTFF] metagenome; soil
2751
2677
-
Ala
GGC
[ENA]
¡û
>WENV180258049
OBEQ010968419
[OBEQ] groundwater metagenome; groundwater
20865
20940
+
Ala
GGC
[ENA]
¡û
>W1910726306
MGRJ01000009
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 [MGRJ]
22052
22125
+
Ala
GGC
[ENA]
¡û
>W1910726559
MGRQ01000012
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_40_32 [MGRQ]
22051
22124
+
Ala
GGC
[ENA]
¡û
>W1910726849
MGRZ01000001
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_40_36 [MGRZ]
22045
22118
+
Ala
GGC
[ENA]
¡û
>W1910727252
MGSL01000008
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_40_28 [MGSL]
22046
22119
+
Ala
GGC
[ENA]
¡û
>W2010859734
MGRJ01000009
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_40_28 [MGRJ]
22052
22125
+
Ala
GGC
[ENA]
¡û
>W2010859987
MGRQ01000012
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_40_32 [MGRQ]
22051
22124
+
Ala
GGC
[ENA]
¡û
>W2010860277
MGRZ01000001
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_40_36 [MGRZ]
22045
22118
+
Ala
GGC
[ENA]
¡û
>W2010860680
MGSL01000008
Deltaproteobacteria
Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_40_28 [MGSL]
22046
22119
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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