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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281594 (7 seq.)
>WENV180248838
OBEQ010145285
[OBEQ] groundwater metagenome; groundwater
2071
1999
-
Thr
CGT
[ENA]
¡û
>WENV180249790
OBEQ010230582
[OBEQ] groundwater metagenome; groundwater
5309
5381
+
Thr
CGT
[ENA]
¡û
>WENV180267174
OBEQ011823587
[OBEQ] groundwater metagenome; groundwater
43584
43656
+
Thr
CGT
[ENA]
¡û
>W1910732254
MHGL01000054
Unclassified
Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_01_FULL_49_10 [MHGL]
7032
7107
+
Thr
CGT
[ENA]
¡û
>W1910732604
MHGY01000042
Unclassified
Omnitrophica WOR_2 bacterium RIFCSPLOWO2_02_FULL_50_19 [MHGY]
1351
1426
+
Thr
CGT
[ENA]
¡û
>W2010865684
MHGL01000054
Unclassified
Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_01_FULL_49_10 [MHGL]
7032
7107
+
Thr
CGT
[ENA]
¡û
>W2010866034
MHGY01000042
Unclassified
Omnitrophica WOR_2 bacterium RIFCSPLOWO2_02_FULL_50_19 [MHGY]
1351
1426
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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