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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281632 (66 seq.)
>W1710776318
LIZN01000002
Actinomycetota
Thermobifida halotolerans [LIZN]
392991
393066
+
Met
CAT
[ENA]
¡û
>W1711183471
LWLB01000001
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
154946
154871
-
Met
CAT
[ENA]
¡û
>W1711346040
MCOK01000001
Actinomycetota
Nocardiopsis sinuspersici [MCOK]
5851878
5851953
+
Met
CAT
[ENA]
¡û
>W131053523
ANAD01000059
Actinomycetota
Nocardiopsis halophila DSM 44494 [ANAD]
40937
40862
-
Met
CAT
[ENA]
¡û
>W131054291
ANAS01000019
Actinomycetota
Nocardiopsis baichengensis YIM 90130 [ANAS]
215412
215487
+
Met
CAT
[ENA]
¡û
>W131054856
ANBB01000033
Actinomycetota
Nocardiopsis potens DSM 45234 [ANBB]
137794
137869
+
Met
CAT
[ENA]
¡û
>W131054926
ANBC01000295
Actinomycetota
Nocardiopsis lucentensis DSM 44048 [ANBC]
5984
6059
+
Met
CAT
[ENA]
¡û
>W131055146
ANBG01000175
Actinomycetota
Nocardiopsis gilva YIM 90087 [ANBG]
8088
8163
+
Met
CAT
[ENA]
¡û
>W131055192
ANBH01000067
Actinomycetota
Nocardiopsis chromatogenes YIM 90109 [ANBH]
32493
32568
+
Met
CAT
[ENA]
¡û
>W131098843
AOSG01000082
Actinomycetota
Thermobifida fusca TM51 [AOSG]
44295
44220
-
Met
CAT
[ENA]
¡û
>W1711492111
MKKC01000153
Actinomycetota
Nocardiopsis sp. CNR-923 [MKKC]
91194
91119
-
Met
CAT
[ENA]
¡û
>W131053503
ANAC01000022
Actinomycetota
Nocardiopsis alba DSM 43377 [ANAC]
80164
80089
-
Met
CAT
[ENA]
¡û
>W131053577
ANAE01000083
Actinomycetota
Nocardiopsis prasina DSM 43845 [ANAE]
21546
21471
-
Met
CAT
[ENA]
¡û
>W131054611
ANAW01000217
Actinomycetota
Nocardiopsis synnemataformans DSM 44143 [ANAW]
86579
86654
+
Met
CAT
[ENA]
¡û
>W131054666
ANAX01000335
Actinomycetota
Nocardiopsis halotolerans DSM 44410 [ANAX]
7598
7523
-
Met
CAT
[ENA]
¡û
>W131054688
ANAY01000011
Actinomycetota
Nocardiopsis kunsanensis DSM 44524 [ANAY]
171245
171320
+
Met
CAT
[ENA]
¡û
>W131054735
ANAZ01000001
Actinomycetota
Nocardiopsis valliformis DSM 45023 [ANAZ]
81578
81503
-
Met
CAT
[ENA]
¡û
>W131054814
ANBA01000013
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
329584
329659
+
Met
CAT
[ENA]
¡û
>W131054971
ANBD01000047
Actinomycetota
Nocardiopsis alkaliphila YIM 80379 [ANBD]
10552
10627
+
Met
CAT
[ENA]
¡û
>W131055048
ANBE01000033
Actinomycetota
Nocardiopsis xinjiangensis YIM 90004 [ANBE]
123028
122953
-
Met
CAT
[ENA]
¡û
>W131055117
ANBF01000181
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
6349
6424
+
Met
CAT
[ENA]
¡û
>W131179363
ARMI01000045
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
44246
44321
+
Met
CAT
[ENA]
¡û
>C025615
CP000088
Actinomycetota
Thermobifida fusca YX [CP000088]
3135484
3135409
-
Met
CAT
[Ensembl]
¡û
>C171070713
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
705526
705601
+
Met
CAT
-
¡û
>w001915
AAAQ02000008
Actinomycetota
Thermobifida fusca [AAAQ]
91630
91558
-
Met
CAT
[ENA]
¡û
>W141219664
AZXF01000005
Actinomycetota
Nocardiopsis sp. CNT312 [AZXF]
59272
59197
-
Met
CAT
[ENA]
¡û
>W141236331
BAZE01000003
Actinomycetota
Nocardiopsis alba TP-A0876 [BAZE]
160773
160698
-
Met
CAT
[ENA]
¡û
>C181064841
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
715630
715705
+
Met
CAT
-
¡û
>C181072220
CP022753
Actinomycetota
Nocardiopsis gilva YIM 90087 [CP022753]
5809382
5809307
-
Met
CAT
-
¡û
>C191212890
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
4829900
4829975
+
Met
CAT
-
¡û
>W09109546
ABUI01000003
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [ABUI]
141532
141457
-
Met
CAT
[ENA]
¡û
>W1910285479
FRFF01000169
Actinomycetota
Nocardiopsis sp. JB363 [FRFF]
156567
156642
+
Met
CAT
[ENA]
¡û
>W1910568585
JEMR01000005
Actinomycetota
Thermobifida fusca GAFM-TF-ZOO [JEMR]
124168
124241
+
Met
CAT
[ENA]
¡û
>W1910575996
JRUV01000311
Actinomycetota
Thermobifida halotolerans DSM 44931 [JRUV]
31436
31363
-
Met
CAT
[ENA]
¡û
>W1911539587
ONLN01000123
Actinomycetota
Thermobifida fusca [ONLN]
11141
11068
-
Met
CAT
[ENA]
¡û
>W1911709944
QPNC01000023
Actinomycetota
Nocardiopsis sp. FIRDI 009 [QPNC]
84693
84618
-
Met
CAT
[ENA]
¡û
>W1810046859
NYMS01000048
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
472998
473073
+
Met
CAT
[ENA]
¡û
>W1810400346
PYGA01000017
Actinomycetota
Murinocardiopsis flavida DSM 45312 [PYGA]
61558
61631
+
Met
CAT
[ENA]
¡û
>W1810570444
QEIM01000004
Actinomycetota
Marinitenerispora sediminis TPS83 [QEIM]
45868
45793
-
Met
CAT
[ENA]
¡û
>W1810570543
QEIN01000211
Actinomycetota
Marinitenerispora sediminis TPS81 [QEIN]
1454
1379
-
Met
CAT
[ENA]
¡û
>W1810570563
QEIO01000018
Actinomycetota
Marinitenerispora sediminis TPS16 [QEIO]
45883
45808
-
Met
CAT
[ENA]
¡û
>W1810608315
QGTF01000007
Actinomycetota
Nocardiopsis sp. L17-MgMaSL7 [QGTF]
284890
284965
+
Met
CAT
[ENA]
¡û
>W1810756405
QPFC01000241
Actinomycetota
Nocardiopsis sp. TNDT3 [QPFC]
2501
2576
+
Met
CAT
[ENA]
¡û
>ENV09003127
ADGO01006010
Compost metagenome contig00001
335
410
+
Met
CAT
[ENA]
¡û
>W1511568528
LAJC01000040
Actinomycetota
Allosalinactinospora lopnorensis CA15-2 [LAJC]
2239
2314
+
Met
CAT
[ENA]
¡û
>W1511584548
LAVM01000015
Actinomycetota
Nocardiopsis sp. SBT366 [LAVM]
81329
81254
-
Met
CAT
[ENA]
¡û
>W1511656829
LEKI01000111
Actinomycetota
Nocardiopsis sp. RV163 [LEKI]
8514
8589
+
Met
CAT
[ENA]
¡û
>W1511697711
LGEC01000089
Actinomycetota
Nocardiopsis sp. NRRL B-16309 [LGEC]
18436
18511
+
Met
CAT
[ENA]
¡û
>C121001873
CP002041
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [CP002040, CP002041]
249466
249541
+
Met
CAT
[Ensembl]
¡û
>W1610051342
BBGT01000352
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BBGT]
2467
2392
-
Met
CAT
[ENA]
¡û
>W1610068522
BCRK01000014
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
21560
21635
+
Met
CAT
[ENA]
¡û
>W1610068901
BCRR01000019
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
14348
14423
+
Met
CAT
[ENA]
¡û
>W1610069190
BCSH01000002
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
86647
86722
+
Met
CAT
[ENA]
¡û
>W1610073725
BCWB01000037
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BCWB]
49011
48936
-
Met
CAT
[ENA]
¡û
>C131006720
CP003788
Actinomycetota
Nocardiopsis alba ATCC BAA-2165 [CP003788]
2784578
2784653
+
Met
CAT
[Ensembl]
¡û
>W1610612158
LGEM01000016
Actinomycetota
Thermobifida cellulosilytica TB100 [LGEM]
121982
122057
+
Met
CAT
[ENA]
¡û
>W1610640424
LIZN01000002
Actinomycetota
Thermobifida halotolerans [LIZN]
392991
393066
+
Met
CAT
[ENA]
¡û
>W1710047741
BBGT01000352
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BBGT]
2467
2392
-
Met
CAT
[ENA]
¡û
>W1710065895
BCRK01000014
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
21560
21635
+
Met
CAT
[ENA]
¡û
>W1710066274
BCRR01000019
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
14348
14423
+
Met
CAT
[ENA]
¡û
>W1710066563
BCSH01000002
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
86647
86722
+
Met
CAT
[ENA]
¡û
>W1710070843
BCWB01000037
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BCWB]
49011
48936
-
Met
CAT
[ENA]
¡û
>W1710570127
FOUY01000001
Actinomycetota
Pseudonocardia ammonioxydans [FOUY]
58058
57983
-
Met
CAT
[ENA]
¡û
>W1710588530
FQZK01000020
Actinomycetota
Nocardiopsis flavescens [FQZK]
19252
19327
+
Met
CAT
[ENA]
¡û
>W1710600734
FUWS01000011
Actinomycetota
Marinactinospora thermotolerans DSM 45154 [FUWS]
182697
182772
+
Met
CAT
[ENA]
¡û
>W1710733664
LGEM01000016
Actinomycetota
Thermobifida cellulosilytica TB100 [LGEM]
121982
122057
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK