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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281766 (25 seq.)
>W1711711572
MTAZ01000098
Bacteroidota
Arenibacter amylolyticus AK53 [MTAZ]
207
131
-
Arg
TCT
[ENA]
¡û
>W131223460
AUCB01000033
Bacteroidota
Arenibacter certesii DSM 19833 [AUCB]
9655
9579
-
Arg
TCT
[ENA]
¡û
>W131234653
AUKX01000056
Bacteroidota
Arenibacter latericius DSM 15913 [AUKX]
4696
4772
+
Arg
TCT
[ENA]
¡û
>WENV180102909
OAOZ01048806
[OAOZ] marine metagenome; ENVO:00002010
76
2
-
Arg
TCT
[ENA]
¢þ
>WENV180210141
OBAL01124978
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
266
340
+
Arg
TCT
[ENA]
¢þ
>WENV180396745
OBPV01078999
[OBPV] marine metagenome; ENVO:00002010
107
181
+
Arg
TCT
[ENA]
¢þ
>W141079131
ATLG01000012
Bacteroidota
Cellulophaga baltica 4 [ATLG]
286431
286505
+
Arg
TCT
[ENA]
¡û
>W141079164
ATLH01000013
Bacteroidota
Cellulophaga baltica 13 [ATLH]
307621
307695
+
Arg
TCT
[ENA]
¡û
>W141079199
ATLI01000012
Bacteroidota
Cellulophaga baltica 18 [ATLI]
370681
370755
+
Arg
TCT
[ENA]
¡û
>W141079232
ATLJ01000015
Bacteroidota
Cellulophaga baltica NN016038 [ATLJ]
14813
14887
+
Arg
TCT
[ENA]
¡û
>WENV170130524
CENR01005846
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
911
985
+
Arg
TCT
[ENA]
¢þ
>C181067212
CP022515
Bacteroidota
Arenibacter algicola SMS7 [CP022515]
3529135
3529211
+
Arg
TCT
-
¡û
>W09110746
ABVW01000004
Bacteroidota
Flavobacteria bacterium MS024-3C [ABVW]
46044
46118
+
Arg
TCT
[ENA]
¡û
>W141807594
JPOO01000001
Bacteroidota
Arenibacter algicola [JPOO]
1636091
1636167
+
Arg
TCT
[ENA]
¡û
>C151061201
CP009887
Bacteroidota
Cellulophaga baltica NN016038 [CP009887]
2755451
2755525
+
Arg
TCT
[Ensembl]
¡û
>C151062876
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
2802619
2802693
+
Arg
TCT
[Ensembl]
¡û
>C11104722
CP002453
Bacteroidota
Cellulophaga algicola DSM 14237 [CP002453]
3519778
3519852
+
Arg
TCT
[Ensembl]
¡û
>W1511320942
JQCT01000028
Bacteroidota
Cellulophaga sp. E6(2014) E6[2014] [JQCT]
191369
191443
+
Arg
TCT
[ENA]
¡û
>C161068707
CP014224
Bacteroidota
Wenyingzhuangia fucanilytica CZ1127 [CP014224]
2897667
2897593
-
Arg
TCT
[Ensembl]
¡û
>W1610082709
BDGL01000028
Bacteroidota
Arenibacter sp. NBRC 103722 C-21 [BDGL]
339
263
-
Arg
TCT
[ENA]
¡û
>W1710081883
BDGL01000028
Bacteroidota
Arenibacter sp. NBRC 103722 C-21 [BDGL]
339
263
-
Arg
TCT
[ENA]
¡û
>W1710587023
FQXQ01000007
Bacteroidota
Wenyingzhuangia marina [FQXQ]
12953
13027
+
Arg
TCT
[ENA]
¡û
>W1710587884
FQYX01000002
Bacteroidota
Arenibacter nanhaiticus [FQYX]
277713
277789
+
Arg
TCT
[ENA]
¡û
>W1710587914
FQYX01000020
Bacteroidota
Arenibacter nanhaiticus [FQYX]
82204
82280
+
Arg
TCT
[ENA]
¡û
>W1710606149
FWXO01000002
Bacteroidota
Cellulophaga tyrosinoxydans [FWXO]
383856
383780
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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