This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281959 (11 seq.)
>W141088613
AUVG01000246
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
1810
1737
-
Thr
GGT
[ENA]
¡û
>WENV181230324
OFEK01000646
[OFEK] activated sludge metagenome; Anaerobic digester
1773
1848
+
Thr
GGT
[ENA]
¡û
>WENV181412040
OGCI01074162
[OGCI] hot springs metagenome; Hot spring water
220
295
+
Thr
GGT
[ENA]
¡û
>WENV183779125
PPYF01130130
[PPYF] human gut metagenome; stool from patient with Crohn's disease
5574
5499
-
Thr
GGT
[ENA]
¡û
>WENV170002712
AGTN01111501
[AGTN] bioreactor metagenome; poplar biomass
68
143
+
Thr
GGT
[ENA]
¡û
>C231539401
CP110889
Bacillota
Thermoclostridium stercorarium RKWS1 [CP110889]
436966
437039
+
Thr
GGT
-
¡û
>C161076013
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
455392
455464
+
Thr
GGT
[Ensembl]
¡û
>W1610043733
BAZZ01000047
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
103
175
+
Thr
GGT
[ENA]
¡û
>C131011030
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
422500
422572
+
Thr
GGT
-
¡û
>C131011896
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
422387
422459
+
Thr
GGT
-
¡û
>W1710040893
BAZZ01000047
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
103
175
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK