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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282090 (51 seq.)
>W1710785699
LJIC01000011
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
16630
16706
+
Met
CAT
[ENA]
¡û
>W1711188773
LWQT01000037
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
14706
14630
-
Met
CAT
[ENA]
¡û
>W1711188817
LWQU01000042
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
1171
1247
+
Met
CAT
[ENA]
¡û
>W1711505326
MKVK01000011
Alphaproteobacteria
Magnetospirillum sp. 64-120 [MKVK]
57546
57470
-
Met
CAT
[ENA]
¡û
>W1711505900
MKVY01000014
Alphaproteobacteria
Rhizobiales bacterium 65-9 [MKVY]
9061
8985
-
Met
CAT
[ENA]
¡û
>W131094262
AONQ01000050
Alphaproteobacteria
Paramagnetospirillum caucaseum SO-1 [AONQ]
29750
29826
+
Met
CAT
[ENA]
¡û
>W131166443
ARCM01000001
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
350288
350364
+
Met
CAT
[ENA]
¡û
>W131175711
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
451203
451127
-
Met
CAT
[ENA]
¡û
>W131228532
AUGA01000005
Alphaproteobacteria
Bradyrhizobium sp. th.b2 [AUGA]
11082
11006
-
Met
CAT
[ENA]
¡û
>C013764
AP007255
Alphaproteobacteria
Magnetospirillum magneticum AMB-1 [AP007255]
3263385
3263309
-
Met
CAT
[Ensembl]
¡û
>C171041971
CP015848
Alphaproteobacteria
Magnetospirillum sp. ME-1 [CP015848]
4080282
4080358
+
Met
CAT
-
¡û
>WENV180015674
FSSO01000044
[FSSO] metagenome; soil
2416
2340
-
Met
CAT
[ENA]
¢þ
>WENV180028842
FTJH01111796
[FTJH] metagenome; soil
320
244
-
Met
CAT
[ENA]
¢þ
>w001836
AAAP01003693
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
2279
2201
-
Met
CAT
[ENA]
¡û
>W141043056
AMFB01000021
Alphaproteobacteria
Bradyrhizobium sp. DFCI-1 [AMFB]
34448
34524
+
Met
CAT
[ENA]
¡û
>WENV181379404
OFRD01001183
[OFRD] wastewater metagenome; Exp Tend CN 100WW
4727
4651
-
Met
CAT
[ENA]
¢þ
>WENV181385961
OFRL01000216
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
4727
4651
-
Met
CAT
[ENA]
¢þ
>WENV181399882
OFSF01000136
[OFSF] wastewater metagenome; Exp Tend VB 100WW
17548
17624
+
Met
CAT
[ENA]
¢þ
>W141223324
BADD01000558
Alphaproteobacteria
Rhodopseudomonas sp. B29 [BADD]
2517
2441
-
Met
CAT
[ENA]
¡û
>WENV170002821
AGTN01139326
[AGTN] bioreactor metagenome; poplar biomass
2689
2765
+
Met
CAT
[ENA]
¢þ
>C181041849
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
1496772
1496848
+
Met
CAT
-
¡û
>C181041897
CP019967
Alphaproteobacteria
Rhodopseudomonas palustris YSC3 [CP019967]
1438273
1438349
+
Met
CAT
-
¡û
>C181155097
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
879460
879384
-
Met
CAT
-
¡û
>C181155147
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
879460
879384
-
Met
CAT
-
¡û
>W09107608
ABJR01000005
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
264398
264474
+
Met
CAT
[ENA]
¡û
>W1910498995
FXXN01000028
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
687543
687619
+
Met
CAT
[ENA]
¡û
>W1911245303
NSJY01000020
Alphaproteobacteria
Bradyrhizobium sp. UFLA03-84 [NSJY]
143462
143386
-
Met
CAT
[ENA]
¡û
>W1911760550
QWVU01000003
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
63082
63006
-
Met
CAT
[ENA]
¡û
>W1810101807
PGTO01000010
Alphaproteobacteria
Paramagnetospirillum kuznetsovii LBB-42 [PGTO]
128692
128768
+
Met
CAT
[ENA]
¡û
>W1810400102
PYFV01000005
Alphaproteobacteria
Bradyrhizobium sp. MOS004 [PYFV]
138548
138624
+
Met
CAT
[ENA]
¡û
>W1810679422
QKQS01000009
Alphaproteobacteria
Rhodopseudomonas palustris XCP [QKQS]
28509
28433
-
Met
CAT
[ENA]
¡û
>W1810787529
QRDT01000036
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
11847
11771
-
Met
CAT
[ENA]
¡û
>W1810884426
QUMP01000036
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
11847
11771
-
Met
CAT
[ENA]
¡û
>C151101043
HG794546
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 v2 [HG794546]
1420036
1420112
+
Met
CAT
[Ensembl]
¡û
>W10110077
ADBQ01000004
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
283391
283315
-
Met
CAT
[ENA]
¡û
>W10112817
ADFI01000008
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
199940
200016
+
Met
CAT
[ENA]
¡û
>C10110745
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
1581285
1581361
+
Met
CAT
[Ensembl]
¡û
>C10112211
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
2639555
2639479
-
Met
CAT
[Ensembl]
¡û
>W11112514
ADBQ01000004
Alphaproteobacteria
Ancylobacter novellus DSM 506 [ADBQ]
283391
283315
-
Met
CAT
[ENA]
¡û
>W11116044
ADFI01000008
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
199940
200016
+
Met
CAT
[ENA]
¡û
>C11118768
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
4460724
4460648
-
Met
CAT
[Ensembl]
¡û
>W1511510889
JXSL01000020
Alphaproteobacteria
Paramagnetospirillum magnetotacticum MS-1 [JXSL]
376579
376655
+
Met
CAT
[ENA]
¡û
>W1511625918
LCZM01000004
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
32049
32125
+
Met
CAT
[ENA]
¡û
>W1511705993
LGTB01000010
Alphaproteobacteria
Bradyrhizobium viridifuturi SEMIA 690 [LGTB]
194141
194065
-
Met
CAT
[ENA]
¡û
>C161108375
LN997848
Alphaproteobacteria
Magnetospirillum sp. XM-1 [LN997848]
2226480
2226556
+
Met
CAT
-
¡û
>W1610049379
BBEX01000011
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
296
372
+
Met
CAT
[ENA]
¡û
>W1610649505
LJIC01000011
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
16630
16706
+
Met
CAT
[ENA]
¡û
>W1610990892
LWQT01000037
Alphaproteobacteria
Paramagnetospirillum marisnigri [LWQT]
14706
14630
-
Met
CAT
[ENA]
¡û
>W1610990936
LWQU01000042
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
1171
1247
+
Met
CAT
[ENA]
¡û
>W1710045778
BBEX01000011
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
296
372
+
Met
CAT
[ENA]
¡û
>W1710505298
FMTP01000001
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
192561
192485
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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