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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282090 (43 seq.)
>W1711411859
MGTP01000205
Thermodesulfobacteriota
Desulfuromonadales bacterium GWD2_54_10 [MGTP]
3609
3534
-
Ala
GGC
[ENA]
¡û
>W131228731
AUGE01000019
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
68805
68880
+
Ala
GGC
[ENA]
¡û
>C010266
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
2511611
2511536
-
Ala
GGC
[Ensembl]
¡û
>w024816
AAZA01000054
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
18191
18114
-
Ala
GGC
[ENA]
¡û
>W08010641
ABRF01000006
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
159009
158937
-
Ala
GGC
[ENA]
¡û
>WENV181230875
OFEK01004617
[OFEK] activated sludge metagenome; Anaerobic digester
3604
3679
+
Ala
GGC
[ENA]
¢þ
>WENV181682771
OGOU01020247
[OGOU] human gut metagenome; faeces
2012
1937
-
Ala
GGC
[ENA]
¢þ
>WENV181891114
OGXO01005676
[OGXO] human gut metagenome; faeces
3609
3534
-
Ala
GGC
[ENA]
¢þ
>WENV181910442
OGYC01010687
[OGYC] human gut metagenome; faeces
2210
2285
+
Ala
GGC
[ENA]
¢þ
>WENV182537505
OIXH01008751
[OIXH] human gut metagenome; faeces
5182
5257
+
Ala
GGC
[ENA]
¢þ
>WENV182595990
OJIY01000213
[OJIY] metagenome; faeces
22637
22712
+
Ala
GGC
[ENA]
¢þ
>W141277884
JAEX01000015
Thermodesulfobacteriota
Desulfocurvus vexinensis DSM 17965 [JAEX]
42559
42634
+
Ala
GGC
[ENA]
¡û
>W141277888
JAEX01000021
Thermodesulfobacteriota
Desulfocurvus vexinensis DSM 17965 [JAEX]
13240
13165
-
Ala
GGC
[ENA]
¡û
>WENV182883377
OKSB01008317
[OKSB] human gut metagenome; faeces
5197
5272
+
Ala
GGC
[ENA]
¢þ
>C08005201
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
2568205
2568280
+
Ala
GGC
[Ensembl]
¡û
>WENV183474247
OMET01009248
[OMET] human gut metagenome; feces
115
40
-
Ala
GGC
[ENA]
¢þ
>WENV183492903
OMGI01001800
[OMGI] human gut metagenome; human gut
8182
8257
+
Ala
GGC
[ENA]
¢þ
>WENV183501439
OMGS01000233
[OMGS] human gut metagenome; human gut
9924
9999
+
Ala
GGC
[ENA]
¢þ
>WENV183505683
OMGX01015740
[OMGX] human gut metagenome; human gut
74
1
-
Ala
GGC
[ENA]
¢þ
>WENV183747218
PPCM01000438
[PPCM] marine sediment metagenome; marine sediment
17161
17236
+
Ala
GGC
[ENA]
¢þ
>WENV170381410
CETW01160963
[CETW] marine metagenome genome assembly TARA_052_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
316
243
-
Ala
GGC
[ENA]
¢þ
>WENV170392457
CEUB01040954
[CEUB] marine metagenome genome assembly TARA_138_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
173
100
-
Ala
GGC
[ENA]
¢þ
>WENV170446938
CEUY01181052
[CEUY] marine metagenome genome assembly TARA_123_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
435
362
-
Ala
GGC
[ENA]
¢þ
>WENV170451560
CEUZ01195640
[CEUZ] marine metagenome genome assembly TARA_125_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
272
199
-
Ala
GGC
[ENA]
¢þ
>WENV170660288
JXWT01055136
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
144
69
-
Ala
GGC
[ENA]
¢þ
>WENV170662218
JXWW01012755
[JXWW] soil metagenome; rice field; organic GM Plot
243
168
-
Ala
GGC
[ENA]
¢þ
>WENV170873606
MDTB01234989
[MDTB] marine metagenome; seawater
3259
3186
-
Ala
GGC
[ENA]
¢þ
>WENV170906682
MDTE01041989
[MDTE] marine metagenome; seawater
11554
11627
+
Ala
GGC
[ENA]
¢þ
>WENV170908471
MDTE01064993
[MDTE] marine metagenome; seawater
1482
1555
+
Ala
GGC
[ENA]
¢þ
>C181081063
CP023415
Thermodesulfobacteriota
Desulfovibrio sp. G11 [CP023415]
3183162
3183087
-
Ala
GGC
-
¡û
>W09105101
AAON01000187
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [AAON]
1246
1171
-
Ala
GGC
[ENA]
¡û
>W09118241
ACCT01000008
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 [ACCT]
3091
3016
-
Ala
GGC
[ENA]
¡û
>C09106430
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
2344267
2344192
-
Ala
GGC
[Ensembl]
¡û
>W1810486154
QAXR01000004
Thermodesulfobacteriota
Geobacter sp. DSM 2909 [QAXR]
29329
29254
-
Ala
GGC
[ENA]
¡û
>C151059758
CP009788
Thermodesulfobacteriota
Geobacter pickeringii G13 [CP009788]
1942799
1942724
-
Ala
GGC
[Ensembl]
¡û
>W10111688
ADDR01000052
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
10058
10133
+
Ala
GGC
[ENA]
¡û
>W11107018
ACWM01000066
Thermodesulfobacteriota
Desulfovibrio sp. 6_1_46AFAA [ACWM]
76583
76658
+
Ala
GGC
[ENA]
¡û
>W11114615
ADDR01000052
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
10058
10133
+
Ala
GGC
[ENA]
¡û
>WENV004828
AACY020135218
Marine microbial communities from Global Ocean Sampling (GOS)
175
98
-
Ala
GGC
[ENA]
>C161068982
CP014229
Thermodesulfobacteriota
Desulfovibrio fairfieldensis CCUG 45958 [CP014229]
3170314
3170389
+
Ala
GGC
[Ensembl]
¡û
>WENV059997
AACY023382869
Marine microbial communities from Global Ocean Sampling (GOS)
1195
1272
+
Ala
GGC
[ENA]
>W1710515609
FNBX01000013
Thermodesulfobacteriota
Desulfovibrio legallii [FNBX]
545
470
-
Ala
GGC
[ENA]
¡û
>W1710579866
FPIW01000017
Thermodesulfobacteriota
Desulfovibrio desulfuricans [FPIW]
42437
42512
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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