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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282263 (174 seq.)
>W1710858984
LMBR01000059
Chlorobiota
Chlorobium limicola [LMBR]
47
120
+
Lys
TTT
[ENA]
¡û
>W1710858987
LMBR01000062
Chlorobiota
Chlorobium limicola [LMBR]
77
4
-
Lys
TTT
[ENA]
¡û
>W1711167334
LVWG01000035
Chlorobiota
Pelodictyon luteolum [LVWG]
94228
94153
-
Lys
TTT
[ENA]
¡û
>W1711626086
MPJE01000066
Chlorobiota
Chlorobium sp. KB01 [MPJE]
49857
49784
-
Lys
TTT
[ENA]
¡û
>C005292
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
539473
539545
+
Lys
TTT
[Ensembl]
¡û
>C006578
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
436026
436098
+
Lys
TTT
[Ensembl]
¡û
>C016756
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
1965316
1965241
-
Lys
TTT
[Ensembl]
¡û
>C018261
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1709746
1709674
-
Lys
TTT
[Ensembl]
¡û
>w018030
AASE01000006
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
2479
2402
-
Lys
TTT
[ENA]
¡û
>w007193
AAIK01000009
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
60492
60569
+
Lys
TTT
[ENA]
¡û
>w006108
AAHJ01000007
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
5477
5402
-
Lys
TTT
[ENA]
¡û
>C08003493
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
359328
359401
+
Lys
TTT
[Ensembl]
¡û
>C08007687
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
412224
412297
+
Lys
TTT
[Ensembl]
¡û
>WENV183812124
PYLN01000153
[PYLN] freshwater metagenome; meromictic lake
4145
4218
+
Lys
TTT
[ENA]
¢þ
>WENV170613535
FUWD012813029
[FUWD] metagenome; unknown
28360
28435
+
Lys
TTT
[ENA]
¢þ
>WENV170613772
FUWD012819316
[FUWD] metagenome; unknown
938
1011
+
Lys
TTT
[ENA]
¢þ
>WENV170624643
FUWD013184439
[FUWD] metagenome; unknown
13103
13030
-
Lys
TTT
[ENA]
¢þ
>WENV170632924
FUWD013388832
[FUWD] metagenome; unknown
13103
13030
-
Lys
TTT
[ENA]
¢þ
>W09102672
AAIB01000038
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
1172
1099
-
Lys
TTT
[ENA]
¡û
>W09103375
AAJD01000022
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
940
867
-
Lys
TTT
[ENA]
¡û
>SRA1019882
SRR035083.13066
454 Sequencing (SRP001804)
229
302
+
Lys
TTT
[SRA]
>SRA1019922
SRR035083.23315
454 Sequencing (SRP001804)
228
301
+
Lys
TTT
[SRA]
>SRA1019967
SRR035083.31643
454 Sequencing (SRP001804)
384
311
-
Lys
TTT
[SRA]
>SRA1019971
SRR035083.32773
454 Sequencing (SRP001804)
252
179
-
Lys
TTT
[SRA]
>SRA1020037
SRR035083.45500
454 Sequencing (SRP001804)
186
259
+
Lys
TTT
[SRA]
>SRA1020039
SRR035083.46039
454 Sequencing (SRP001804)
86
159
+
Lys
TTT
[SRA]
>SRA1020070
SRR035083.53106
454 Sequencing (SRP001804)
336
409
+
Lys
TTT
[SRA]
>SRA1020092
SRR035083.57011
454 Sequencing (SRP001804)
189
262
+
Lys
TTT
[SRA]
>SRA1020098
SRR035083.57314
454 Sequencing (SRP001804)
88
161
+
Lys
TTT
[SRA]
>SRA1020152
SRR035083.64028
454 Sequencing (SRP001804)
189
262
+
Lys
TTT
[SRA]
>SRA1020156
SRR035083.64520
454 Sequencing (SRP001804)
216
143
-
Lys
TTT
[SRA]
>SRA1020283
SRR035083.89765
454 Sequencing (SRP001804)
166
239
+
Lys
TTT
[SRA]
>SRA1020295
SRR035083.92494
454 Sequencing (SRP001804)
256
329
+
Lys
TTT
[SRA]
>SRA1020323
SRR035083.96913
454 Sequencing (SRP001804)
383
310
-
Lys
TTT
[SRA]
>SRA1020335
SRR035083.98452
454 Sequencing (SRP001804)
4
77
+
Lys
TTT
[SRA]
>SRA1020391
SRR035083.106701
454 Sequencing (SRP001804)
437
510
+
Lys
TTT
[SRA]
>SRA1020475
SRR035083.120602
454 Sequencing (SRP001804)
132
59
-
Lys
TTT
[SRA]
>SRA1020542
SRR035083.131813
454 Sequencing (SRP001804)
104
177
+
Lys
TTT
[SRA]
>SRA1020601
SRR035083.139369
454 Sequencing (SRP001804)
273
346
+
Lys
TTT
[SRA]
>SRA1020626
SRR035083.142518
454 Sequencing (SRP001804)
438
511
+
Lys
TTT
[SRA]
>SRA1020672
SRR035083.150614
454 Sequencing (SRP001804)
375
302
-
Lys
TTT
[SRA]
>SRA1020709
SRR035083.154458
454 Sequencing (SRP001804)
193
266
+
Lys
TTT
[SRA]
>SRA1020764
SRR035083.161685
454 Sequencing (SRP001804)
132
59
-
Lys
TTT
[SRA]
>SRA1020925
SRR035083.186494
454 Sequencing (SRP001804)
327
254
-
Lys
TTT
[SRA]
>SRA1021031
SRR035083.200534
454 Sequencing (SRP001804)
165
238
+
Lys
TTT
[SRA]
>SRA1021049
SRR035083.203366
454 Sequencing (SRP001804)
253
180
-
Lys
TTT
[SRA]
>SRA1021190
SRR035083.221328
454 Sequencing (SRP001804)
174
101
-
Lys
TTT
[SRA]
>SRA1021206
SRR035083.223431
454 Sequencing (SRP001804)
476
403
-
Lys
TTT
[SRA]
>SRA1021220
SRR035083.225854
454 Sequencing (SRP001804)
440
367
-
Lys
TTT
[SRA]
>SRA1021270
SRR035083.234003
454 Sequencing (SRP001804)
174
101
-
Lys
TTT
[SRA]
>SRA1021333
SRR035083.244425
454 Sequencing (SRP001804)
75
148
+
Lys
TTT
[SRA]
>SRA1021351
SRR035083.247187
454 Sequencing (SRP001804)
327
254
-
Lys
TTT
[SRA]
>SRA1021381
SRR035083.253009
454 Sequencing (SRP001804)
392
319
-
Lys
TTT
[SRA]
>SRA1021474
SRR035083.263324
454 Sequencing (SRP001804)
392
319
-
Lys
TTT
[SRA]
>SRA1021489
SRR035083.265174
454 Sequencing (SRP001804)
392
319
-
Lys
TTT
[SRA]
>SRA1021551
SRR035083.272311
454 Sequencing (SRP001804)
423
350
-
Lys
TTT
[SRA]
>SRA1021805
SRR035083.312363
454 Sequencing (SRP001804)
80
7
-
Lys
TTT
[SRA]
>SRA1021905
SRR035083.326911
454 Sequencing (SRP001804)
108
181
+
Lys
TTT
[SRA]
>SRA1021974
SRR035083.333444
454 Sequencing (SRP001804)
76
149
+
Lys
TTT
[SRA]
>SRA1022034
SRR035083.342640
454 Sequencing (SRP001804)
75
148
+
Lys
TTT
[SRA]
>SRA1022142
SRR035083.359085
454 Sequencing (SRP001804)
298
371
+
Lys
TTT
[SRA]
>SRA1022173
SRR035083.363692
454 Sequencing (SRP001804)
392
319
-
Lys
TTT
[SRA]
>SRA1022177
SRR035083.364129
454 Sequencing (SRP001804)
260
333
+
Lys
TTT
[SRA]
>SRA1022183
SRR035083.364838
454 Sequencing (SRP001804)
99
26
-
Lys
TTT
[SRA]
>SRA1022216
SRR035083.369242
454 Sequencing (SRP001804)
5
78
+
Lys
TTT
[SRA]
>SRA1022250
SRR035083.374438
454 Sequencing (SRP001804)
236
309
+
Lys
TTT
[SRA]
>SRA1022263
SRR035083.378561
454 Sequencing (SRP001804)
315
242
-
Lys
TTT
[SRA]
>SRA1022271
SRR035083.379379
454 Sequencing (SRP001804)
228
301
+
Lys
TTT
[SRA]
>SRA1022279
SRR035083.380727
454 Sequencing (SRP001804)
270
343
+
Lys
TTT
[SRA]
>SRA1022432
SRR035083.404784
454 Sequencing (SRP001804)
385
312
-
Lys
TTT
[SRA]
>SRA1022494
SRR035083.413555
454 Sequencing (SRP001804)
428
355
-
Lys
TTT
[SRA]
>SRA1022512
SRR035083.417563
454 Sequencing (SRP001804)
192
265
+
Lys
TTT
[SRA]
>SRA1022514
SRR035083.418538
454 Sequencing (SRP001804)
54
127
+
Lys
TTT
[SRA]
>SRA1022518
SRR035083.419202
454 Sequencing (SRP001804)
273
346
+
Lys
TTT
[SRA]
>SRA1022554
SRR035083.423546
454 Sequencing (SRP001804)
284
211
-
Lys
TTT
[SRA]
>SRA1022601
SRR035083.430985
454 Sequencing (SRP001804)
236
309
+
Lys
TTT
[SRA]
>SRA1022675
SRR035083.440478
454 Sequencing (SRP001804)
453
380
-
Lys
TTT
[SRA]
>SRA1022861
SRR035083.475000
454 Sequencing (SRP001804)
163
236
+
Lys
TTT
[SRA]
>SRA1022896
SRR035083.481353
454 Sequencing (SRP001804)
393
320
-
Lys
TTT
[SRA]
>SRA1022951
SRR035083.493792
454 Sequencing (SRP001804)
324
397
+
Lys
TTT
[SRA]
>SRA1023045
SRR035083.511820
454 Sequencing (SRP001804)
36
109
+
Lys
TTT
[SRA]
>SRA1023051
SRR035083.512127
454 Sequencing (SRP001804)
110
37
-
Lys
TTT
[SRA]
>SRA1023100
SRR035083.519722
454 Sequencing (SRP001804)
104
177
+
Lys
TTT
[SRA]
>SRA1032445
SRR035088.11319
454 Sequencing (SRP001809)
285
212
-
Lys
TTT
[SRA]
>SRA1032782
SRR035088.102627
454 Sequencing (SRP001809)
396
323
-
Lys
TTT
[SRA]
>SRA1032798
SRR035088.105314
454 Sequencing (SRP001809)
125
52
-
Lys
TTT
[SRA]
>SRA1033477
SRR035088.268972
454 Sequencing (SRP001809)
157
230
+
Lys
TTT
[SRA]
>SRA1033828
SRR035088.367893
454 Sequencing (SRP001809)
111
38
-
Lys
TTT
[SRA]
>SRA1034699
SRR035089.155639
454 Sequencing (SRP001810)
287
214
-
Lys
TTT
[SRA]
>SRA1035006
SRR035089.217438
454 Sequencing (SRP001810)
224
151
-
Lys
TTT
[SRA]
>SRA1035095
SRR035089.237058
454 Sequencing (SRP001810)
217
290
+
Lys
TTT
[SRA]
>SRA1035626
SRR035089.342769
454 Sequencing (SRP001810)
288
215
-
Lys
TTT
[SRA]
>SRA1036789
SRR035090.4780
454 Sequencing (SRP001811)
239
312
+
Lys
TTT
[SRA]
>SRA1036869
SRR035090.29670
454 Sequencing (SRP001811)
241
314
+
Lys
TTT
[SRA]
>SRA1036885
SRR035090.31537
454 Sequencing (SRP001811)
227
154
-
Lys
TTT
[SRA]
>SRA1037052
SRR035090.66025
454 Sequencing (SRP001811)
88
15
-
Lys
TTT
[SRA]
>SRA1037161
SRR035090.86257
454 Sequencing (SRP001811)
88
161
+
Lys
TTT
[SRA]
>SRA1037193
SRR035090.91148
454 Sequencing (SRP001811)
88
15
-
Lys
TTT
[SRA]
>SRA1037212
SRR035090.93870
454 Sequencing (SRP001811)
276
349
+
Lys
TTT
[SRA]
>SRA1037246
SRR035090.101895
454 Sequencing (SRP001811)
402
329
-
Lys
TTT
[SRA]
>SRA1037250
SRR035090.102357
454 Sequencing (SRP001811)
240
313
+
Lys
TTT
[SRA]
>SRA1037254
SRR035090.102504
454 Sequencing (SRP001811)
165
238
+
Lys
TTT
[SRA]
>SRA1037259
SRR035090.104096
454 Sequencing (SRP001811)
269
342
+
Lys
TTT
[SRA]
>SRA1037261
SRR035090.104100
454 Sequencing (SRP001811)
200
273
+
Lys
TTT
[SRA]
>SRA1037366
SRR035090.123347
454 Sequencing (SRP001811)
444
517
+
Lys
TTT
[SRA]
>SRA1037381
SRR035090.126236
454 Sequencing (SRP001811)
88
161
+
Lys
TTT
[SRA]
>SRA1037392
SRR035090.127923
454 Sequencing (SRP001811)
206
279
+
Lys
TTT
[SRA]
>SRA1037417
SRR035090.131267
454 Sequencing (SRP001811)
225
152
-
Lys
TTT
[SRA]
>SRA1037460
SRR035090.137997
454 Sequencing (SRP001811)
88
161
+
Lys
TTT
[SRA]
>SRA1037538
SRR035090.150147
454 Sequencing (SRP001811)
261
188
-
Lys
TTT
[SRA]
>SRA1037586
SRR035090.158601
454 Sequencing (SRP001811)
244
317
+
Lys
TTT
[SRA]
>SRA1037654
SRR035090.169930
454 Sequencing (SRP001811)
203
276
+
Lys
TTT
[SRA]
>SRA1037665
SRR035090.171581
454 Sequencing (SRP001811)
476
403
-
Lys
TTT
[SRA]
>SRA1037677
SRR035090.172986
454 Sequencing (SRP001811)
458
385
-
Lys
TTT
[SRA]
>SRA1037768
SRR035090.191683
454 Sequencing (SRP001811)
362
289
-
Lys
TTT
[SRA]
>SRA1037792
SRR035090.196468
454 Sequencing (SRP001811)
102
175
+
Lys
TTT
[SRA]
>SRA1037806
SRR035090.199553
454 Sequencing (SRP001811)
300
373
+
Lys
TTT
[SRA]
>SRA1037851
SRR035090.204676
454 Sequencing (SRP001811)
158
85
-
Lys
TTT
[SRA]
>SRA1037897
SRR035090.215759
454 Sequencing (SRP001811)
168
241
+
Lys
TTT
[SRA]
>SRA1037909
SRR035090.216909
454 Sequencing (SRP001811)
243
316
+
Lys
TTT
[SRA]
>SRA1037937
SRR035090.221364
454 Sequencing (SRP001811)
301
374
+
Lys
TTT
[SRA]
>SRA1037945
SRR035090.224066
454 Sequencing (SRP001811)
355
282
-
Lys
TTT
[SRA]
>SRA1037954
SRR035090.226296
454 Sequencing (SRP001811)
238
311
+
Lys
TTT
[SRA]
>SRA1038007
SRR035090.232936
454 Sequencing (SRP001811)
173
100
-
Lys
TTT
[SRA]
>SRA1038105
SRR035090.246353
454 Sequencing (SRP001811)
246
319
+
Lys
TTT
[SRA]
>SRA1038143
SRR035090.253742
454 Sequencing (SRP001811)
249
176
-
Lys
TTT
[SRA]
>SRA1038228
SRR035090.268523
454 Sequencing (SRP001811)
173
246
+
Lys
TTT
[SRA]
>SRA1038396
SRR035090.297321
454 Sequencing (SRP001811)
337
264
-
Lys
TTT
[SRA]
>SRA1038404
SRR035090.298479
454 Sequencing (SRP001811)
355
282
-
Lys
TTT
[SRA]
>SRA1038430
SRR035090.303130
454 Sequencing (SRP001811)
326
399
+
Lys
TTT
[SRA]
>SRA1038527
SRR035090.320703
454 Sequencing (SRP001811)
73
146
+
Lys
TTT
[SRA]
>SRA1038540
SRR035090.324233
454 Sequencing (SRP001811)
322
395
+
Lys
TTT
[SRA]
>SRA1038572
SRR035090.329452
454 Sequencing (SRP001811)
307
234
-
Lys
TTT
[SRA]
>SRA1038584
SRR035090.331742
454 Sequencing (SRP001811)
345
272
-
Lys
TTT
[SRA]
>SRA1038672
SRR035090.347618
454 Sequencing (SRP001811)
270
197
-
Lys
TTT
[SRA]
>SRA1038723
SRR035090.354591
454 Sequencing (SRP001811)
284
211
-
Lys
TTT
[SRA]
>SRA1038756
SRR035090.360690
454 Sequencing (SRP001811)
313
240
-
Lys
TTT
[SRA]
>SRA1038772
SRR035090.363215
454 Sequencing (SRP001811)
338
265
-
Lys
TTT
[SRA]
>SRA1038831
SRR035090.375949
454 Sequencing (SRP001811)
268
195
-
Lys
TTT
[SRA]
>SRA1038844
SRR035090.379026
454 Sequencing (SRP001811)
50
123
+
Lys
TTT
[SRA]
>SRA1038902
SRR035090.391365
454 Sequencing (SRP001811)
314
241
-
Lys
TTT
[SRA]
>SRA1038922
SRR035090.395377
454 Sequencing (SRP001811)
268
195
-
Lys
TTT
[SRA]
>SRA1038924
SRR035090.395717
454 Sequencing (SRP001811)
37
110
+
Lys
TTT
[SRA]
>SRA1039010
SRR035090.407291
454 Sequencing (SRP001811)
209
282
+
Lys
TTT
[SRA]
>SRA1039119
SRR035090.428839
454 Sequencing (SRP001811)
324
397
+
Lys
TTT
[SRA]
>SRA1039171
SRR035090.436892
454 Sequencing (SRP001811)
226
153
-
Lys
TTT
[SRA]
>SRA1039292
SRR035090.459946
454 Sequencing (SRP001811)
271
198
-
Lys
TTT
[SRA]
>SRA1039315
SRR035090.465504
454 Sequencing (SRP001811)
314
241
-
Lys
TTT
[SRA]
>SRA1039335
SRR035090.469813
454 Sequencing (SRP001811)
106
33
-
Lys
TTT
[SRA]
>SRA1039386
SRR035090.481743
454 Sequencing (SRP001811)
351
424
+
Lys
TTT
[SRA]
>SRA1039460
SRR035090.496399
454 Sequencing (SRP001811)
313
386
+
Lys
TTT
[SRA]
>SRA1039561
SRR035090.516930
454 Sequencing (SRP001811)
337
264
-
Lys
TTT
[SRA]
>SRA1039649
SRR035090.535693
454 Sequencing (SRP001811)
63
136
+
Lys
TTT
[SRA]
>SRA1039724
SRR035090.554090
454 Sequencing (SRP001811)
115
188
+
Lys
TTT
[SRA]
>SRA1039799
SRR035090.572715
454 Sequencing (SRP001811)
123
50
-
Lys
TTT
[SRA]
>SRA1039861
SRR035090.585650
454 Sequencing (SRP001811)
227
154
-
Lys
TTT
[SRA]
>SRA1039925
SRR035090.605121
454 Sequencing (SRP001811)
318
245
-
Lys
TTT
[SRA]
>SRA1040604
SRR035091.121922
454 Sequencing (SRP001812)
183
256
+
Lys
TTT
[SRA]
>SRA1041795
SRR035091.296479
454 Sequencing (SRP001812)
184
257
+
Lys
TTT
[SRA]
>SRA1041838
SRR035091.303482
454 Sequencing (SRP001812)
201
128
-
Lys
TTT
[SRA]
>SRA1045171
SRR035093.18861
454 Sequencing (SRP001814)
108
181
+
Lys
TTT
[SRA]
>SRA1047472
SRR035093.548684
454 Sequencing (SRP001814)
291
364
+
Lys
TTT
[SRA]
>SRA1052748
SRR035098.265737
454 Sequencing (SRP001819)
211
284
+
Lys
TTT
[SRA]
>SRA1053987
SRR035099.26555
454 Sequencing (SRP001820)
316
389
+
Lys
TTT
[SRA]
>SRA1054145
SRR035099.69803
454 Sequencing (SRP001820)
212
285
+
Lys
TTT
[SRA]
>SRA1054351
SRR035099.114707
454 Sequencing (SRP001820)
371
298
-
Lys
TTT
[SRA]
>SRA1054511
SRR035099.150241
454 Sequencing (SRP001820)
180
253
+
Lys
TTT
[SRA]
>SRA1054542
SRR035099.158870
454 Sequencing (SRP001820)
247
320
+
Lys
TTT
[SRA]
>SRA1054766
SRR035099.208392
454 Sequencing (SRP001820)
15
88
+
Lys
TTT
[SRA]
>SRA1054851
SRR035099.231543
454 Sequencing (SRP001820)
238
165
-
Lys
TTT
[SRA]
>SRA1054868
SRR035099.239222
454 Sequencing (SRP001820)
197
124
-
Lys
TTT
[SRA]
>W1610721330
LMBR01000059
Chlorobiota
Chlorobium limicola [LMBR]
47
120
+
Lys
TTT
[ENA]
¡û
>W1610721333
LMBR01000062
Chlorobiota
Chlorobium limicola [LMBR]
77
4
-
Lys
TTT
[ENA]
¡û
>W1610977665
LVWG01000035
Chlorobiota
Pelodictyon luteolum [LVWG]
94228
94153
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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