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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282383 (67 seq.)
>W131176717
ARKG01000062
Bacillota
Cohnella laeviribosi DSM 21336 [ARKG]
22003
22078
+
Asn
GTT
[ENA]
¡û
>W1711418068
MHHN01000125
Bacillota
Paenibacillus sp. RIFOXYA1_FULL_44_5 [MHHN]
1793
1868
+
Asn
GTT
[ENA]
¡û
>W1711679785
MRVI01000001
Bacillota
Paenibacillus ihbetae IHBB 9951 [MRVI]
3522129
3522054
-
Asn
GTT
[ENA]
¡û
>C171098081
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
3703391
3703466
+
Asn
GTT
-
¡û
>C171099974
CP019794
Bacillota
Paenibacillus larvae subsp. pulvifaciens ATCC 13537 [CP019794]
2890745
2890820
+
Asn
GTT
-
¡û
>C171104934
CP020327
Bacillota
Paenibacillus larvae subsp. pulvifaciens CCM 38 [CP020327]
2551009
2551084
+
Asn
GTT
-
¡û
>C171109111
CP020557
Bacillota
Paenibacillus larvae subsp. pulvifaciens SAG 10367 [CP020557]
2709043
2709118
+
Asn
GTT
-
¡û
>W141277418
JAEO01000059
Bacillota
Bacillus sp. J13 [JAEO]
18288
18363
+
Asn
GTT
[ENA]
¡û
>WENV170705613
LNAP01000021
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
127128
127203
+
Asn
GTT
[ENA]
¡û
>W141462576
JFHX01000035
Bacillota
Paenibacillus ehimensis A2 [JFHX]
74
-1
-
Asn
GTT
[ENA]
¡û
>C181038523
CP019652
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 DSM 25430; ERIC_II [CP019652]
449254
449329
+
Asn
GTT
-
¡û
>C181038682
CP019659
Bacillota
Paenibacillus larvae subsp. larvae Eric_IV [CP019659]
486447
486522
+
Asn
GTT
-
¡û
>W1910175708
BJCS01000005
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
394848
394773
-
Asn
GTT
[ENA]
¡û
>W1910175729
BJCS01000008
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
301
376
+
Asn
GTT
[ENA]
¡û
>C141001408
CP003355
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 [CP003355]
447558
447633
+
Asn
GTT
[Ensembl]
¡û
>W1911144768
NPBY01000028
Bacillota
Paenibacillus campinasensis 7537-G1 [NPBY]
69814
69889
+
Asn
GTT
[ENA]
¡û
>W1911178160
NQLZ01000049
Bacillota
Paenibacillus sp. 7541 [NQLZ]
171
96
-
Asn
GTT
[ENA]
¡û
>W1911771199
QXJP01000014
Bacillota
Paenibacillaceae bacterium SCSIO 06110 [QXJP]
27246
27171
-
Asn
GTT
[ENA]
¡û
>W1911771216
QXJP01000072
Bacillota
Paenibacillaceae bacterium SCSIO 06110 [QXJP]
315
240
-
Asn
GTT
[ENA]
¡û
>W1810679759
QKRB01000063
Bacillota
Paenibacillus sambharensis SMB1 [QKRB]
54868
54793
-
Asn
GTT
[ENA]
¡û
>W2010087593
BILX01000090
Bacillota
Paenibacillus ehimensis NBRC 15659 [BILX]
7342
7417
+
Asn
GTT
[ENA]
¡û
>W2010089085
BJCS01000005
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
394848
394773
-
Asn
GTT
[ENA]
¡û
>W2010089106
BJCS01000008
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
301
376
+
Asn
GTT
[ENA]
¡û
>W2011018371
NPBY01000028
Bacillota
Paenibacillus campinasensis 7537-G1 [NPBY]
69814
69889
+
Asn
GTT
[ENA]
¡û
>W2011033119
NQLZ01000049
Bacillota
Paenibacillus sp. 7541 [NQLZ]
171
96
-
Asn
GTT
[ENA]
¡û
>W2011328446
QXJP01000014
Bacillota
Paenibacillaceae bacterium SCSIO 06110 [QXJP]
27246
27171
-
Asn
GTT
[ENA]
¡û
>W2011328463
QXJP01000072
Bacillota
Paenibacillaceae bacterium SCSIO 06110 [QXJP]
315
240
-
Asn
GTT
[ENA]
¡û
>W2011577140
SGWF01000020
Bacillota
Paenibacillus sp. JMULE4 [SGWF]
74436
74361
-
Asn
GTT
[ENA]
¡û
>W2011973563
VCIW01000002
Bacillota
Paenibacillus sp. SYSU_K30003 [VCIW]
251
326
+
Asn
GTT
[ENA]
¡û
>W2011973642
VCIW01000044
Bacillota
Paenibacillus sp. SYSU_K30003 [VCIW]
334
409
+
Asn
GTT
[ENA]
¡û
>W2011986521
VDNU01000065
Bacillota
Paenibacillus sp. IHBB 10380 DE0579 [VDNU]
18162
18237
+
Asn
GTT
[ENA]
¡û
>W2012001623
VEGV01000052
Bacillota
Paenibacillus ihbetae DE0082 [VEGV]
22892
22817
-
Asn
GTT
[ENA]
¡û
>W2012003100
VEHV01000065
Bacillota
Paenibacillus ihbetae DE0044 [VEHV]
18580
18655
+
Asn
GTT
[ENA]
¡û
>W2012003932
VEIJ01000062
Bacillota
Paenibacillus ihbetae DE0024 [VEIJ]
20413
20338
-
Asn
GTT
[ENA]
¡û
>W2012004847
VEIZ01000065
Bacillota
Paenibacillus ihbetae DE0004 [VEIZ]
18270
18345
+
Asn
GTT
[ENA]
¡û
>W2012004988
VEJB01000061
Bacillota
Paenibacillus ihbetae DE0002 [VEJB]
20413
20338
-
Asn
GTT
[ENA]
¡û
>W2012005054
VEJC01000063
Bacillota
Paenibacillus ihbetae DE0001 [VEJC]
18580
18655
+
Asn
GTT
[ENA]
¡û
>W2012005124
VEJD01000063
Bacillota
Paenibacillus ihbetae DE00C2 [VEJD]
20399
20324
-
Asn
GTT
[ENA]
¡û
>W2012005185
VEJE01000062
Bacillota
Paenibacillus ihbetae DE00C1 [VEJE]
20413
20338
-
Asn
GTT
[ENA]
¡û
>W2012005256
VEJF01000063
Bacillota
Paenibacillus ihbetae DE00B2 [VEJF]
20413
20338
-
Asn
GTT
[ENA]
¡û
>W2012005317
VEJG01000063
Bacillota
Paenibacillus ihbetae DE00B1 [VEJG]
20413
20338
-
Asn
GTT
[ENA]
¡û
>W2012037425
VIDW01000013
Bacillota
Paenibacillus sp. tmac-D7 [VIDW]
125793
125718
-
Asn
GTT
[ENA]
¡û
>W2012037486
VIDW01000138
Bacillota
Paenibacillus sp. tmac-D7 [VIDW]
269
194
-
Asn
GTT
[ENA]
¡û
>W2012127965
VSDO01000001
Bacillota
Paenibacillus faecis DSM 23593 [VSDO]
1308242
1308167
-
Asn
GTT
[ENA]
¡û
>W2012402110
WNZX01000019
Bacillota
Paenibacillus validus 2CS3 [WNZX]
88465
88390
-
Asn
GTT
[ENA]
¡û
>W2012402130
WNZX01000026
Bacillota
Paenibacillus validus 2CS3 [WNZX]
162
237
+
Asn
GTT
[ENA]
¡û
>W2012402209
WNZY01000007
Bacillota
Paenibacillus timonensis 12ME58 [WNZY]
201423
201498
+
Asn
GTT
[ENA]
¡û
>W2012402397
WOAA01000024
Bacillota
Paenibacillus campinasensis 3CS1 [WOAA]
28012
28087
+
Asn
GTT
[ENA]
¡û
>W2012435446
WTLI01000008
Bacillota
Paenibacillus sp. YIM B00363 [WTLI]
59670
59745
+
Asn
GTT
[ENA]
¡û
>W2110011839
BCPS01000046
Bacillota
Paenibacillus sp. EPM92 [BCPS]
146
221
+
Asn
GTT
[ENA]
¡û
>W2110011860
BCPS01000054
Bacillota
Paenibacillus sp. EPM92 [BCPS]
278
353
+
Asn
GTT
[ENA]
¡û
>W2110067178
BORZ01000003
Bacillota
Paenibacillus faecis J25TS5 [BORZ]
133229
133154
-
Asn
GTT
[ENA]
¡û
>W2110067264
BOSA01000002
Bacillota
Paenibacillus lactis J31TS3 [BOSA]
568812
568737
-
Asn
GTT
[ENA]
¡û
>W2110068145
BOSK01000007
Bacillota
Paenibacillus sp. J53TS2 [BOSK]
44373
44298
-
Asn
GTT
[ENA]
¡û
>W2110304357
JADCNN020000001
Bacillota
Paenibacillus sp. DXFW5 [JADCNN]
466348
466423
+
Asn
GTT
[ENA]
¡û
>W2110538658
JAGGKI010000003
Bacillota
Paenibacillus lactis DSM 15596 [JAGGKI]
370295
370220
-
Asn
GTT
[ENA]
¡û
>W2110626945
JAHNZO010000030
Bacillota
Paenibacillus sp. SM 69 [JAHNZO]
54394
54319
-
Asn
GTT
[ENA]
¡û
>C201031607
CP019717
Bacillota
Paenibacillus larvae subsp. larvae Eric_V [CP019717]
468359
468434
+
Asn
GTT
-
¡û
>W2110696518
JAIUDG010000013
Bacillota
Paenibacillus sp. alder61 [JAIUDG]
160768
160693
-
Asn
GTT
[ENA]
¡û
>W2110746025
LDJS01000080
Bacillota
Paenibacillus larvae G25-75 [LDJS]
11770
11845
+
Asn
GTT
[ENA]
¡û
>C241243053
CP121102
Bacillota
Paenibacillus larvae PL006 [CP121102]
2724929
2724854
-
Asn
GTT
-
¡û
>W1511585015
LAWY01000039
Bacillota
Paenibacillus larvae MEX14 [LAWY]
26206
26281
+
Asn
GTT
[ENA]
¡û
>W11180991
AGIP01000017
Bacillota
Paenibacillus lactis 154 [AGIP]
87784
87859
+
Asn
GTT
[ENA]
¡û
>C121009312
CP003235
Bacillota
Paenibacillus mucilaginosus 3016 [CP003235]
672968
673043
+
Asn
GTT
[Ensembl]
¡û
>W1610543191
JTHN01000087
Bacillota
Paenibacillus sp. A3 [JTHN]
47956
48031
+
Asn
GTT
[ENA]
¡û
>W1710518319
FNDY01000009
Bacillota
Paenibacillus naphthalenovorans [FNDY]
182776
182701
-
Asn
GTT
[ENA]
¡û
>W1710646322
JTHN01000087
Bacillota
Paenibacillus sp. A3 [JTHN]
47956
48031
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK