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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282537 (9 seq.)
>W131227520
AUFF01000003
Gammaproteobacteria
Arenimonas composti DSM 18010 [AUFF]
432699
432624
-
Thr
TGT
[ENA]
¡û
>W1711384952
MEDO01000006
Gammaproteobacteria
Arenimonas sp. SCN 70-307 [MEDO]
41634
41709
+
Thr
TGT
[ENA]
¡û
>W1711424100
MIDT01000059
Gammaproteobacteria
Xanthomonadales bacterium GWF1_69_6 [MIDT]
15964
15889
-
Thr
TGT
[ENA]
¡û
>WENV180264072
OBEQ011534377
[OBEQ] groundwater metagenome; groundwater
3172
3247
+
Thr
TGT
[ENA]
¡û
>WENV180344182
OBLK01262273
[OBLK] soil metagenome; Clay
114
189
+
Thr
TGT
[ENA]
¡û
>W141094197
AVCH01000015
Gammaproteobacteria
Arenimonas malthae CC-JY-1 [AVCH]
2093
2168
+
Thr
TGT
[ENA]
¡û
>WENV181295848
OFHJ01001166
[OFHJ] soil metagenome; Clay
4775
4850
+
Thr
TGT
[ENA]
¡û
>WENV181295962
OFHJ01002977
[OFHJ] soil metagenome; Clay
3883
3958
+
Thr
TGT
[ENA]
¡û
>W141148249
AWXU01000021
Gammaproteobacteria
Arenimonas composti TR7-09 = DSM 18010 [AWXU]
68438
68363
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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