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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282644 (58 seq.)
>W1710876694
LMPL01000002
Actinomycetota
Williamsia sp. Leaf354 [LMPL]
702534
702609
+
His
GTG
[ENA]
¡û
>W1710909530
LNQO01000002
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
67549
67474
-
His
GTG
[ENA]
¡û
>W1711221520
LXRE01000045
Actinomycetota
Gordonia sp. LAM0048 [LXRE]
35463
35538
+
His
GTG
[ENA]
¡û
>W1711234505
LYCQ01000134
Actinomycetota
Nocardia farcinica [LYCQ]
1248
1173
-
His
GTG
[ENA]
¡û
>W1711234526
LYCQ01000307
Actinomycetota
Nocardia farcinica [LYCQ]
34394
34469
+
His
GTG
[ENA]
¡û
>W1711281932
LZMP01000001
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
262570
262645
+
His
GTG
[ENA]
¡û
>W1711492254
MKKG01000005
Actinomycetota
Gordonia sp. CNJ-863 [MKKG]
9779
9704
-
His
GTG
[ENA]
¡û
>W1711776928
MVKV01000015
Actinomycetota
Gordonia sp. IITR100 [MVKV]
67691
67616
-
His
GTG
[ENA]
¡û
>W1711784504
MVPX01000157
Actinomycetota
Gordonia sp. i37 [MVPX]
11836
11761
-
His
GTG
[ENA]
¡û
>W1712061695
NGFO01000015
Actinomycetota
Gordonia lacunae [NGFO]
74262
74337
+
His
GTG
[ENA]
¡û
>W131156545
AQPW01000004
Actinomycetota
Gordonia terrae C-6 [AQPW]
242964
243039
+
His
GTG
[ENA]
¡û
>W131186260
ARVZ01000001
Actinomycetota
Gordonia polyisoprenivorans HW436 [ARVZ]
3342930
3343005
+
His
GTG
[ENA]
¡û
>W131239497
BANS01000027
Actinomycetota
Gordonia amicalis NBRC 100051 [BANS]
10057
9982
-
His
GTG
[ENA]
¡û
>W131239711
BANX01000020
Actinomycetota
Gordonia soli NBRC 108243 [BANX]
163256
163331
+
His
GTG
[ENA]
¡û
>W131240882
BAOQ01000001
Actinomycetota
Gordonia paraffinivorans NBRC 108238 [BAOQ]
60871
60796
-
His
GTG
[ENA]
¡û
>W141144170
AWTB01000022
Actinomycetota
Gordonia amicalis CCMA-559 [AWTB]
17573
17648
+
His
GTG
[ENA]
¡û
>W141200033
AYXO01000006
Actinomycetota
Gordonia alkanivorans CGMCC 6845 [AYXO]
6979
6904
-
His
GTG
[ENA]
¡û
>W141256033
CBVP010000074
Actinomycetota
Gordonia alkanivorans s104 [CBVP]
9644
9569
-
His
GTG
[ENA]
¡û
>WENV170566155
FKKE01007934
[FKKE] freshwater metagenome; freshwater
7376
7451
+
His
GTG
[ENA]
¢þ
>C181181639
CP029604
Actinomycetota
Gordonia terrae NRRL B-16283 [CP029604]
2301273
2301199
-
His
GTG
-
¡û
>C191020790
CP022580
Actinomycetota
Gordonia rubripertincta CWB2 [CP022580]
3354894
3354968
+
His
GTG
-
¡û
>C191050823
CP027114
Actinomycetota
Gordonia alkanivorans YC-RL2 [CP027114]
2820971
2820897
-
His
GTG
-
¡û
>C191117166
CP033972
Actinomycetota
Gordonia insulae MMS17-SY073 [CP033972]
540511
540437
-
His
GTG
-
¡û
>W09109072
ABTV01000002
Actinomycetota
Gordonia bronchialis DSM 43247 [ABTV]
318765
318690
-
His
GTG
[ENA]
¡û
>W141756181
JNXA01000001
Actinomycetota
Gordonia terrae [JNXA]
534327
534402
+
His
GTG
[ENA]
¡û
>W1910611716
LFLR01000007
Actinomycetota
Gordonia paraffinivorans MTZ 041 [LFLR]
117232
117158
-
His
GTG
[ENA]
¡û
>W1911180216
NQOE01000001
Actinomycetota
Gordonia polyisoprenivorans herm_1 [NQOE]
88214
88140
-
His
GTG
[ENA]
¡û
>W1810189522
PKJC01000001
Actinomycetota
Gordonia terrae UMB0777 [PKJC]
36462
36388
-
His
GTG
[ENA]
¡û
>C10107087
CP001802
Actinomycetota
Gordonia bronchialis DSM 43247 [CP001802]
2132030
2131955
-
His
GTG
[Ensembl]
¡û
>W1511518890
JXYP01000015
Actinomycetota
Williamsia herbipolensis ARP1 [JXYP]
61491
61416
-
His
GTG
[ENA]
¡û
>W11184691
BACI01000095
Actinomycetota
Gordonia alkanivorans NBRC 16433 [BACI]
56604
56679
+
His
GTG
[ENA]
¡û
>C121006235
CP003119
Actinomycetota
Gordonia polyisoprenivorans VH2 [CP003119]
2170762
2170687
-
His
GTG
[Ensembl]
¡û
>C161031096
CP011022
Actinomycetota
Mycolicibacterium neoaurum NRRL B-3805 [CP011022]
4154927
4155000
+
His
GTG
-
¡û
>C161079901
CP014956
Actinomycetota
Mycobacteroides abscessus FLAC029 [CP014956]
1609919
1609844
-
His
GTG
-
¡û
>C161080072
CP014959
Actinomycetota
Mycobacteroides abscessus FLAC048 [CP014959]
1566275
1566200
-
His
GTG
-
¡û
>C161100063
CP016594
Actinomycetota
Gordonia terrae 3612 [CP016594]
2300022
2299947
-
His
GTG
-
¡û
>W1610050705
BBGD01000235
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 = JCM 10675 [BBGD]
1591
1516
-
His
GTG
[ENA]
¡û
>W1610051018
BBGK01000102
Actinomycetota
Gordonia amicalis NBRC 100051 = JCM 11271 [BBGK]
3059
3135
+
His
GTG
[ENA]
¡û
>W1610051104
BBGN01000198
Actinomycetota
Gordonia westfalica JCM 11757 [BBGN]
1594
1518
-
His
GTG
[ENA]
¡û
>W121123908
BAEI01000070
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 [BAEI]
20428
20353
-
His
GTG
[ENA]
¡û
>W121124368
BAFD01000026
Actinomycetota
Gordonia terrae NBRC 100016 [BAFD]
68747
68672
-
His
GTG
[ENA]
¡û
>W121126547
BAHB01000068
Actinomycetota
Gordonia rubripertincta NBRC 101908 [BAHB]
87316
87241
-
His
GTG
[ENA]
¡û
>W121126689
BAHE01000016
Actinomycetota
Gordonia namibiensis NBRC 108229 [BAHE]
9922
9847
-
His
GTG
[ENA]
¡û
>C131001595
CP002907
Actinomycetota
Gordonia sp. KTR9 [CP002907]
2204081
2204006
-
His
GTG
[Ensembl]
¡û
>W1610515298
FMAX01000002
Actinomycetota
Gordonia sp. v-85 [FMAX]
67549
67474
-
His
GTG
[ENA]
¡û
>W1610638750
LIYC01000003
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
68628
68553
-
His
GTG
[ENA]
¡û
>W1610666974
LJYI01000029
Actinomycetota
Mycobacteroides sp. H002 H002 [LJYI]
290755
290680
-
His
GTG
[ENA]
¡û
>W1610739040
LMPL01000002
Actinomycetota
Williamsia sp. Leaf354 [LMPL]
702534
702609
+
His
GTG
[ENA]
¡û
>W1610767889
LNQO01000002
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
67549
67474
-
His
GTG
[ENA]
¡û
>W1611006038
LXRE01000045
Actinomycetota
Gordonia sp. LAM0048 [LXRE]
35463
35538
+
His
GTG
[ENA]
¡û
>W1611041217
LZMP01000001
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
262570
262645
+
His
GTG
[ENA]
¡û
>W1710047104
BBGD01000235
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 = JCM 10675 [BBGD]
1591
1516
-
His
GTG
[ENA]
¡û
>W1710047417
BBGK01000102
Actinomycetota
Gordonia amicalis NBRC 100051 = JCM 11271 [BBGK]
3059
3135
+
His
GTG
[ENA]
¡û
>W1710047503
BBGN01000198
Actinomycetota
Gordonia westfalica JCM 11757 [BBGN]
1594
1518
-
His
GTG
[ENA]
¡û
>W1710500988
FMAX01000002
Actinomycetota
Gordonia sp. v-85 [FMAX]
67549
67474
-
His
GTG
[ENA]
¡û
>W1710527888
FNLM01000034
Actinomycetota
Gordonia westfalica [FNLM]
972788
972863
+
His
GTG
[ENA]
¡û
>W1710598134
FTNT01000008
Actinomycetota
Williamsia sterculiae [FTNT]
220500
220575
+
His
GTG
[ENA]
¡û
>W1710774581
LIYC01000003
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
68628
68553
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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