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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282859 (121 seq.)
>W1710801458
LJWX01000002
Betaproteobacteria
Ferrovum sp. JA12 [LJWX]
343972
344048
+
Pro
TGG
[ENA]
¡û
>W1711021216
LQZA01000001
Betaproteobacteria
Ferrovum sp. PN-J185 [LQZA]
534791
534867
+
Pro
TGG
[ENA]
¡û
>W1711413600
MGWO01000007
Betaproteobacteria
Gallionellales bacterium GWA2_54_124 [MGWO]
1100418
1100494
+
Pro
TGG
[ENA]
¡û
>W1711413601
MGWO01000007
Betaproteobacteria
Gallionellales bacterium GWA2_54_124 [MGWO]
1100552
1100628
+
Pro
TGG
[ENA]
¡û
>W1711413831
MGXE01000053
Betaproteobacteria
Gallionellales bacterium RIFOXYD12_FULL_53_10 [MGXE]
2950
2874
-
Pro
TGG
[ENA]
¡û
>W1711582060
MNUX01000030
Betaproteobacteria
Gallionellaceae bacterium CG1_02_60_325 [MNUX]
11814
11890
+
Pro
TGG
[ENA]
¡û
>W1711680555
MRWL01000383
Betaproteobacteria
Sulfuricella sp. BIN3 [MRWL]
779
855
+
Pro
TGG
[ENA]
¡û
>C013371
CP000284
Betaproteobacteria
Methylobacillus flagellatus KT [CP000284]
79967
80043
+
Pro
TGG
[Ensembl]
¡û
>WENV180012199
FLSK01256037
[FLSK] metagenome; saliva
348
272
-
Pro
TGG
[ENA]
¢þ
>WENV180038394
FZPU01000105
[FZPU] metagenome; underground water
8858
8934
+
Pro
TGG
[ENA]
¢þ
>WENV180038535
FZPY01000013
[FZPY] metagenome; underground water
79
3
-
Pro
TGG
[ENA]
¢þ
>WENV180225887
OBBP01001100
[OBBP] human oral metagenome; human oral
1483
1407
-
Pro
TGG
[ENA]
¢þ
>WENV180717561
ODGE01000054
[ODGE] human metagenome; G_DNA_Buccal mucosa
17630
17706
+
Pro
TGG
[ENA]
¢þ
>WENV180726198
ODGS01053484
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
97
173
+
Pro
TGG
[ENA]
¢þ
>WENV180727661
ODGU01009262
[ODGU] human metagenome; G_DNA_Supragingival plaque
624
700
+
Pro
TGG
[ENA]
¢þ
>WENV180731403
ODGW01000326
[ODGW] human metagenome; G_DNA_Supragingival plaque
2518
2594
+
Pro
TGG
[ENA]
¢þ
>WENV180733471
ODGZ01000093
[ODGZ] human metagenome; G_DNA_Supragingival plaque
41305
41229
-
Pro
TGG
[ENA]
¢þ
>WENV180736081
ODHB01004535
[ODHB] human metagenome; G_DNA_Supragingival plaque
1270
1194
-
Pro
TGG
[ENA]
¢þ
>WENV180746227
ODHM01020654
[ODHM] human metagenome; G_DNA_Buccal mucosa
31
107
+
Pro
TGG
[ENA]
¢þ
>WENV180749962
ODHS01000172
[ODHS] human metagenome; G_DNA_Supragingival plaque
43183
43107
-
Pro
TGG
[ENA]
¢þ
>WENV180755074
ODHU01012455
[ODHU] human metagenome; G_DNA_Supragingival plaque
920
996
+
Pro
TGG
[ENA]
¢þ
>WENV180759582
ODHY01038960
[ODHY] human metagenome; G_DNA_Buccal mucosa
273
349
+
Pro
TGG
[ENA]
¢þ
>WENV180774835
ODIJ01087242
[ODIJ] human metagenome; G_DNA_Tongue dorsum
205
129
-
Pro
TGG
[ENA]
¢þ
>WENV180776233
ODIK01024910
[ODIK] human metagenome; G_DNA_Tongue dorsum
974
898
-
Pro
TGG
[ENA]
¢þ
>WENV180777517
ODIL01013237
[ODIL] human metagenome; G_DNA_Supragingival plaque
966
890
-
Pro
TGG
[ENA]
¢þ
>WENV180787611
ODIS01009875
[ODIS] human metagenome; G_DNA_Supragingival plaque
1201
1125
-
Pro
TGG
[ENA]
¢þ
>WENV180797495
ODJB01066650
[ODJB] human metagenome; G_DNA_Supragingival plaque
594
670
+
Pro
TGG
[ENA]
¢þ
>WENV180803391
ODJE01122197
[ODJE] human metagenome; G_DNA_Tongue dorsum
199
275
+
Pro
TGG
[ENA]
¢þ
>WENV180803882
ODJG01000142
[ODJG] human metagenome; G_DNA_Supragingival plaque
41194
41118
-
Pro
TGG
[ENA]
¢þ
>WENV180806298
ODJH01008283
[ODJH] human metagenome; G_DNA_Tongue dorsum
1465
1389
-
Pro
TGG
[ENA]
¢þ
>WENV180813600
ODJO01001372
[ODJO] human metagenome; G_DNA_Supragingival plaque
6602
6678
+
Pro
TGG
[ENA]
¢þ
>WENV180824834
ODJX01063557
[ODJX] human metagenome; G_DNA_Supragingival plaque
111
35
-
Pro
TGG
[ENA]
¢þ
>WENV180831928
ODKC01000255
[ODKC] human metagenome; G_DNA_Supragingival plaque
17365
17441
+
Pro
TGG
[ENA]
¢þ
>WENV180833716
ODKD01000132
[ODKD] human metagenome; G_DNA_Supragingival plaque
6491
6567
+
Pro
TGG
[ENA]
¢þ
>WENV180836402
ODKE01173329
[ODKE] human metagenome; G_DNA_Supragingival plaque
108
184
+
Pro
TGG
[ENA]
¢þ
>WENV180843279
ODKN01001488
[ODKN] human metagenome; G_DNA_Supragingival plaque
686
610
-
Pro
TGG
[ENA]
¢þ
>WENV180845224
ODKT01000021
[ODKT] human metagenome; G_DNA_Supragingival plaque
82649
82573
-
Pro
TGG
[ENA]
¢þ
>WENV180853325
ODKW01071356
[ODKW] human metagenome; G_DNA_Tongue dorsum
138
214
+
Pro
TGG
[ENA]
¢þ
>WENV180858977
ODLC01102319
[ODLC] human metagenome; G_DNA_Tongue dorsum
196
120
-
Pro
TGG
[ENA]
¢þ
>WENV180859229
ODLD01000096
[ODLD] human metagenome; G_DNA_Supragingival plaque
17651
17727
+
Pro
TGG
[ENA]
¢þ
>WENV180891707
ODMQ01006223
[ODMQ] human metagenome; G_DNA_Supragingival plaque
313
389
+
Pro
TGG
[ENA]
¢þ
>WENV180913078
ODSR01006429
[ODSR] human metagenome; G_DNA_Buccal mucosa
110
186
+
Pro
TGG
[ENA]
¢þ
>WENV180923214
ODTJ01069898
[ODTJ] human metagenome; G_DNA_Supragingival plaque
300
376
+
Pro
TGG
[ENA]
¢þ
>WENV180924709
ODTK01012578
[ODTK] human metagenome; G_DNA_Supragingival plaque
317
241
-
Pro
TGG
[ENA]
¢þ
>WENV180927597
ODTM01001600
[ODTM] human metagenome; G_DNA_Supragingival plaque
2037
1961
-
Pro
TGG
[ENA]
¢þ
>WENV180933788
ODTR01002601
[ODTR] human metagenome; G_DNA_Supragingival plaque
1729
1805
+
Pro
TGG
[ENA]
¢þ
>WENV180935155
ODTS01077345
[ODTS] human metagenome; G_DNA_Subgingival plaque
305
229
-
Pro
TGG
[ENA]
¢þ
>WENV180937726
ODTX01000045
[ODTX] human metagenome; G_DNA_Supragingival plaque
31796
31872
+
Pro
TGG
[ENA]
¢þ
>WENV180944392
ODUC01016169
[ODUC] human metagenome; G_DNA_Supragingival plaque
332
256
-
Pro
TGG
[ENA]
¢þ
>WENV180957967
ODUL01000051
[ODUL] human metagenome; G_DNA_Supragingival plaque
41238
41162
-
Pro
TGG
[ENA]
¢þ
>WENV180964244
ODUO01000748
[ODUO] human metagenome; G_DNA_Supragingival plaque
13062
12986
-
Pro
TGG
[ENA]
¢þ
>WENV180968897
ODUT01109609
[ODUT] human metagenome; G_DNA_Tongue dorsum
99
23
-
Pro
TGG
[ENA]
¢þ
>WENV180972718
ODUW01000071
[ODUW] human metagenome; G_DNA_Supragingival plaque
41236
41160
-
Pro
TGG
[ENA]
¢þ
>WENV180974653
ODUX01036860
[ODUX] human metagenome; G_DNA_Buccal mucosa
311
235
-
Pro
TGG
[ENA]
¢þ
>WENV180978294
ODUZ01041987
[ODUZ] human metagenome; G_DNA_Tongue dorsum
389
313
-
Pro
TGG
[ENA]
¢þ
>WENV180978680
ODVA01001325
[ODVA] human metagenome; G_DNA_Buccal mucosa
205
281
+
Pro
TGG
[ENA]
¢þ
>WENV180981020
ODVE01005377
[ODVE] human metagenome; G_DNA_Supragingival plaque
221
297
+
Pro
TGG
[ENA]
¢þ
>WENV180982454
ODVF01000022
[ODVF] human metagenome; G_DNA_Supragingival plaque
95116
95040
-
Pro
TGG
[ENA]
¢þ
>WENV180986886
ODVK01001672
[ODVK] human metagenome; G_DNA_Supragingival plaque
7788
7864
+
Pro
TGG
[ENA]
¢þ
>WENV180999020
ODVT01004761
[ODVT] human metagenome; G_DNA_Buccal mucosa
1191
1267
+
Pro
TGG
[ENA]
¢þ
>WENV181002682
ODVX01001200
[ODVX] human metagenome; G_DNA_Supragingival plaque
16834
16910
+
Pro
TGG
[ENA]
¢þ
>WENV181006475
ODWA01025471
[ODWA] human metagenome; G_DNA_Buccal mucosa
73
149
+
Pro
TGG
[ENA]
¢þ
>WENV181008354
ODWE01004242
[ODWE] human metagenome; G_DNA_Supragingival plaque
1960
1884
-
Pro
TGG
[ENA]
¢þ
>WENV181018888
ODWU01000169
[ODWU] human metagenome; G_DNA_Supragingival plaque
17334
17410
+
Pro
TGG
[ENA]
¢þ
>WENV181025636
ODXB01010245
[ODXB] human metagenome; G_DNA_Buccal mucosa
199
275
+
Pro
TGG
[ENA]
¢þ
>WENV181029610
ODXF01001013
[ODXF] human metagenome; G_DNA_Supragingival plaque
2017
1941
-
Pro
TGG
[ENA]
¢þ
>WENV181045084
ODXV01155194
[ODXV] human metagenome; G_DNA_Tongue dorsum
132
56
-
Pro
TGG
[ENA]
¢þ
>WENV181064822
ODYP01112334
[ODYP] human metagenome; G_DNA_Supragingival plaque
192
268
+
Pro
TGG
[ENA]
¢þ
>WENV181067077
ODZI01005884
[ODZI] human metagenome; G_DNA_Supragingival plaque
1996
1920
-
Pro
TGG
[ENA]
¢þ
>WENV181070026
OEAE01000141
[OEAE] human metagenome; G_DNA_Supragingival plaque
42202
42126
-
Pro
TGG
[ENA]
¢þ
>WENV181075186
OEAO01082756
[OEAO] human metagenome; G_DNA_Tongue dorsum
175
99
-
Pro
TGG
[ENA]
¢þ
>WENV181080540
OEAS01055148
[OEAS] human metagenome; G_DNA_Supragingival plaque
322
398
+
Pro
TGG
[ENA]
¢þ
>WENV181083885
OEAV01031306
[OEAV] human metagenome; G_DNA_Supragingival plaque
531
607
+
Pro
TGG
[ENA]
¢þ
>WENV181101203
OECM01015368
[OECM] human metagenome; G_DNA_Buccal mucosa
348
272
-
Pro
TGG
[ENA]
¢þ
>WENV181106888
OEEI01000583
[OEEI] human metagenome; G_DNA_Supragingival plaque
494
570
+
Pro
TGG
[ENA]
¢þ
>WENV181115602
OEEO01156989
[OEEO] human metagenome; G_DNA_Supragingival plaque
89
165
+
Pro
TGG
[ENA]
¢þ
>WENV181121054
OEFL01000266
[OEFL] human metagenome; G_DNA_Supragingival plaque
14796
14720
-
Pro
TGG
[ENA]
¢þ
>WENV181123540
OEFQ01000013
[OEFQ] human metagenome; G_DNA_Supragingival plaque
122317
122393
+
Pro
TGG
[ENA]
¢þ
>WENV181137534
OEGJ01006317
[OEGJ] human metagenome; G_DNA_Supragingival plaque
1678
1602
-
Pro
TGG
[ENA]
¢þ
>WENV181143733
OEHM01007412
[OEHM] human metagenome; G_DNA_Supragingival plaque
1137
1213
+
Pro
TGG
[ENA]
¢þ
>WENV181144266
OEHO01001130
[OEHO] metagenome; unknown
444
520
+
Pro
TGG
[ENA]
¢þ
>WENV181146511
OEHQ01007824
[OEHQ] human metagenome; G_DNA_Supragingival plaque
662
586
-
Pro
TGG
[ENA]
¢þ
>WENV181158318
OEIH01000372
[OEIH] human metagenome; G_DNA_Supragingival plaque
10434
10358
-
Pro
TGG
[ENA]
¢þ
>WENV181160473
OEIK01010221
[OEIK] human metagenome; G_DNA_Supragingival plaque
718
642
-
Pro
TGG
[ENA]
¢þ
>WENV181177768
OEJS01016579
[OEJS] human metagenome; G_DNA_Supragingival plaque
305
229
-
Pro
TGG
[ENA]
¢þ
>WENV181178952
OEJT01000705
[OEJT] human metagenome; G_DNA_Supragingival plaque
2887
2811
-
Pro
TGG
[ENA]
¢þ
>WENV181180694
OEJU01000660
[OEJU] human metagenome; G_DNA_Supragingival plaque
18381
18457
+
Pro
TGG
[ENA]
¢þ
>WENV181182081
OEJV01002098
[OEJV] human metagenome; G_DNA_Supragingival plaque
905
981
+
Pro
TGG
[ENA]
¢þ
>WENV183683921
ORMF010638506
[ORMF] groundwater metagenome; groundwater
91007
90931
-
Pro
TGG
[ENA]
¢þ
>WENV170426284
CEUQ01070010
[CEUQ] marine metagenome genome assembly TARA_124_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9662
9738
+
Pro
TGG
[ENA]
¢þ
>WENV170434104
CEUS01235625
[CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
366
290
-
Pro
TGG
[ENA]
¢þ
>WENV170451854
CEUZ01220629
[CEUZ] marine metagenome genome assembly TARA_125_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
19980
20056
+
Pro
TGG
[ENA]
¢þ
>WENV170455801
CEVA01141796
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
501
425
-
Pro
TGG
[ENA]
¢þ
>WENV170558410
CXWL01068213
[CXWL] groundwater metagenome; biofilm material
5721
5645
-
Pro
TGG
[ENA]
¢þ
>WENV170558573
CXWL01079246
[CXWL] groundwater metagenome; biofilm material
3861
3785
-
Pro
TGG
[ENA]
¢þ
>WENV170559032
CXWL01107318
[CXWL] groundwater metagenome; biofilm material
2318
2242
-
Pro
TGG
[ENA]
¢þ
>WENV170574646
FLYN01002342
[FLYN] hot springs metagenome; Sediment
470
394
-
Pro
TGG
[ENA]
¢þ
>WENV170618466
FUWD012969984
[FUWD] metagenome; unknown
491
415
-
Pro
TGG
[ENA]
¢þ
>WENV170639456
JFJP01002959
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2410
2334
-
Pro
TGG
[ENA]
¢þ
>WENV170654505
JRYL01000145
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
236452
236376
-
Pro
TGG
[ENA]
¢þ
>WENV170961402
MLJW01000026
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
176760
176836
+
Pro
TGG
[ENA]
¢þ
>WENV170961588
MLJW01000192
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
3110
3034
-
Pro
TGG
[ENA]
¢þ
>C191209572
LR134378
Betaproteobacteria
Lautropia mirabilis NCTC12852 [LR134378]
1635224
1635300
+
Pro
TGG
-
¡û
>W09101013
AADX02000005
Betaproteobacteria
Methylobacillus flagellatus KT [AADX]
156622
156546
-
Pro
TGG
[ENA]
¡û
>W09134289
ACSD01000008
Betaproteobacteria
Gallionella capsiferriformans ES-2 [ACSD]
56279
56355
+
Pro
TGG
[ENA]
¡û
>W09134290
ACSD01000008
Betaproteobacteria
Gallionella capsiferriformans ES-2 [ACSD]
56414
56490
+
Pro
TGG
[ENA]
¡û
>W1910128348
BHVT01000073
Betaproteobacteria
Sulfurirhabdus autotrophica BiS0 [BHVT]
12187
12263
+
Pro
TGG
[ENA]
¡û
>C141000194
AP013066
Betaproteobacteria
Sulfuricella denitrificans skB26 [AP013066]
1427509
1427433
-
Pro
TGG
[Ensembl]
¡û
>W1910547763
FZOA01000010
Betaproteobacteria
Methylobacillus rhizosphaerae Ca-68 [FZOA]
10848
10924
+
Pro
TGG
[ENA]
¡û
>W1810464181
QAAE01000006
Betaproteobacteria
Nitrosomonas aestuarii Nm36 [QAAE]
128451
128527
+
Pro
TGG
[ENA]
¡û
>W1510019318
BBWF01000017
Betaproteobacteria
Sulfuricella sp. T08 [BBWF]
52246
52322
+
Pro
TGG
[ENA]
¡û
>C10107134
CP002159
Betaproteobacteria
Gallionella capsiferriformans ES-2 [CP002159]
1678283
1678207
-
Pro
TGG
[Ensembl]
¡û
>C10107135
CP002159
Betaproteobacteria
Gallionella capsiferriformans ES-2 [CP002159]
1678148
1678072
-
Pro
TGG
[Ensembl]
¡û
>W11144234
AEQP01000008
Betaproteobacteria
Lautropia mirabilis ATCC 51599 [AEQP]
39195
39119
-
Pro
TGG
[ENA]
¡û
>W121124624
BAFJ01000005
Betaproteobacteria
Sulfuricella denitrificans skB26 [BAFJ]
275892
275968
+
Pro
TGG
[ENA]
¡û
>W1610665415
LJWX01000002
Betaproteobacteria
Ferrovum sp. JA12 [LJWX]
343972
344048
+
Pro
TGG
[ENA]
¡û
>W1610869504
LQZA01000001
Betaproteobacteria
Ferrovum sp. PN-J185 [LQZA]
534791
534867
+
Pro
TGG
[ENA]
¡û
>W1710546990
FOCP01000003
Betaproteobacteria
Nitrosomonas marina [FOCP]
105039
105115
+
Pro
TGG
[ENA]
¡û
>W1710551708
FOGH01000020
Betaproteobacteria
Nitrosomonas sp. Nm51 [FOGH]
35860
35784
-
Pro
TGG
[ENA]
¡û
>W1710553922
FOIA01000004
Betaproteobacteria
Nitrosomonas marina [FOIA]
115324
115248
-
Pro
TGG
[ENA]
¡û
>W1710567254
FOSP01000003
Betaproteobacteria
Nitrosomonas aestuarii [FOSP]
127536
127612
+
Pro
TGG
[ENA]
¡û
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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