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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282874 (135 seq.)
>W1710786466
LJIY01000014
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
89
164
+
Thr
TGT
[ENA]
¡û
>W1710987635
LPUT01000015
Bacillota
Sporosarcina sp. HYO08 [LPUT]
1458
1383
-
Thr
TGT
[ENA]
¡û
>W1710987648
LPUT01000016
Bacillota
Sporosarcina sp. HYO08 [LPUT]
1458
1383
-
Thr
TGT
[ENA]
¡û
>W1710987661
LPUT01000017
Bacillota
Sporosarcina sp. HYO08 [LPUT]
922
847
-
Thr
TGT
[ENA]
¡û
>W1711114472
LTZG01000021
Bacillota
Planococcus maritimus [LTZG]
357076
357001
-
Thr
TGT
[ENA]
¡û
>W1711114499
LTZG01000041
Bacillota
Planococcus maritimus [LTZG]
982
1057
+
Thr
TGT
[ENA]
¡û
>W1711434650
MINM01000011
Bacillota
Planococcus maritimus [MINM]
457
532
+
Thr
TGT
[ENA]
¡û
>W1711434689
MINM01000038
Bacillota
Planococcus maritimus [MINM]
173779
173704
-
Thr
TGT
[ENA]
¡û
>W1711632732
MPTA01000006
Bacillota
Paenisporosarcina indica [MPTA]
234768
234693
-
Thr
TGT
[ENA]
¡û
>C171035213
CP015027
Bacillota
Sporosarcina sp. P33 [CP015027]
1970938
1971013
+
Thr
TGT
-
¡û
>C171035258
CP015027
Bacillota
Sporosarcina sp. P33 [CP015027]
737122
737047
-
Thr
TGT
-
¡û
>C171035499
CP015108
Bacillota
Sporosarcina ureae S204 [CP015108]
882332
882257
-
Thr
TGT
-
¡û
>C171035521
CP015109
Bacillota
Sporosarcina ureae P17a [CP015109]
2070512
2070587
+
Thr
TGT
-
¡û
>C171035567
CP015109
Bacillota
Sporosarcina ureae P17a [CP015109]
862950
862875
-
Thr
TGT
-
¡û
>C171036830
CP015207
Bacillota
Sporosarcina ureae P8 [CP015207]
1994253
1994328
+
Thr
TGT
-
¡û
>C171036877
CP015207
Bacillota
Sporosarcina ureae P8 [CP015207]
912857
912782
-
Thr
TGT
-
¡û
>C171037682
CP015348
Bacillota
Sporosarcina ureae P32a [CP015348]
2044029
2044104
+
Thr
TGT
-
¡û
>C171037728
CP015348
Bacillota
Sporosarcina ureae P32a [CP015348]
827980
827905
-
Thr
TGT
-
¡û
>C171037750
CP015349
Bacillota
Sporosarcina sp. P37 [CP015349]
1966475
1966550
+
Thr
TGT
-
¡û
>C171037795
CP015349
Bacillota
Sporosarcina sp. P37 [CP015349]
807519
807444
-
Thr
TGT
-
¡û
>C171063495
CP017560
Bacillota
Sporosarcina ureilytica LMG 22257 [CP017560]
830781
830856
+
Thr
TGT
-
¡û
>C171063505
CP017560
Bacillota
Sporosarcina ureilytica LMG 22257 [CP017560]
1031951
1032026
+
Thr
TGT
-
¡û
>C171063529
CP017560
Bacillota
Sporosarcina ureilytica LMG 22257 [CP017560]
135916
135841
-
Thr
TGT
-
¡û
>W131225533
AUDQ01000026
Bacillota
Sporosarcina ureae DSM 2281 [AUDQ]
741
816
+
Thr
TGT
[ENA]
¡û
>W131055401
ANBV01000002
Bacillota
Planococcus halocryophilus Or1 [ANBV]
1884
1959
+
Thr
TGT
[ENA]
¡û
>W141091489
AUYR01000102
Bacillota
Planococcus glaciei CHR43 [AUYR]
86
161
+
Thr
TGT
[ENA]
¡û
>W141215183
AZUC01000003
Bacillota
Sporosarcina sp. D27 [AZUC]
985
910
-
Thr
TGT
[ENA]
¡û
>W141215229
AZUC01000064
Bacillota
Sporosarcina sp. D27 [AZUC]
15964
15889
-
Thr
TGT
[ENA]
¡û
>WENV170574131
FLYM01008595
[FLYM] hot springs metagenome; Sediment
920
845
-
Thr
TGT
[ENA]
¢þ
>C181113581
CP025135
Bacillota
Planococcus sp. MB-3u-03 [CP025135]
90410
90485
+
Thr
TGT
-
¡û
>C181113615
CP025135
Bacillota
Planococcus sp. MB-3u-03 [CP025135]
1246919
1246994
+
Thr
TGT
-
¡û
>C181197190
CP031230
Bacillota
Sporosarcina sp. PTS2304 [CP031230]
2949593
2949668
+
Thr
TGT
-
¡û
>C181197234
CP031230
Bacillota
Sporosarcina sp. PTS2304 [CP031230]
1664378
1664303
-
Thr
TGT
-
¡û
>C191089404
CP032418
Bacillota
Paenisporosarcina cavernae K2R23-3 [CP032418]
1973993
1973918
-
Thr
TGT
-
¡û
>C191157002
CP038012
Bacillota
Sporosarcina pasteurii BNCC 337394 [CP038012]
120370
120445
+
Thr
TGT
-
¡û
>C191157013
CP038012
Bacillota
Sporosarcina pasteurii BNCC 337394 [CP038012]
307098
307173
+
Thr
TGT
-
¡û
>C191157049
CP038012
Bacillota
Sporosarcina pasteurii BNCC 337394 [CP038012]
2678247
2678172
-
Thr
TGT
-
¡û
>W1910469116
FWYH01000007
Bacillota
Planomicrobium okeanokoites Marseille-P2029 [FWYH]
176447
176372
-
Thr
TGT
[ENA]
¡û
>W1910469145
FWYH01000010
Bacillota
Planomicrobium okeanokoites Marseille-P2029 [FWYH]
2142179
2142104
-
Thr
TGT
[ENA]
¡û
>W1911118341
NOKQ01000134
Bacillota
Tetzosporium hominis VT-49 [NOKQ]
81
156
+
Thr
TGT
[ENA]
¡û
>W1911118386
NOKQ01000276
Bacillota
Tetzosporium hominis VT-49 [NOKQ]
526
601
+
Thr
TGT
[ENA]
¡û
>W1911535235
OLMT01000009
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
654628
654553
-
Thr
TGT
[ENA]
¡û
>W1911535255
OLMT01000009
Bacillota
Lysinibacillus timonensis Marseille-P5727 [OLMT]
652460
652385
-
Thr
TGT
[ENA]
¡û
>W1911652763
QBEW01000013
Bacillota
Planococcus citreus DSM 20549 [QBEW]
25792
25717
-
Thr
TGT
[ENA]
¡û
>W1911682441
QKOI01000007
Bacillota
Planomicrobium sp. Y50 [QKOI]
183252
183177
-
Thr
TGT
[ENA]
¡û
>W1911682453
QKOI01000008
Bacillota
Planomicrobium sp. Y50 [QKOI]
435
510
+
Thr
TGT
[ENA]
¡û
>W1810048901
PCGR01000013
Bacillota
Chryseomicrobium excrementi ET03 [PCGR]
448
373
-
Thr
TGT
[ENA]
¡û
>W1810066879
PDYK01000040
Bacillota
Sporosarcina sp. P10 [PDYK]
725
650
-
Thr
TGT
[ENA]
¡û
>W1810066930
PDYL01000038
Bacillota
Sporosarcina sp. P12(2017) [PDYL]
1236
1161
-
Thr
TGT
[ENA]
¡û
>W1810066983
PDYM01000078
Bacillota
Sporosarcina sp. P13 [PDYM]
514
589
+
Thr
TGT
[ENA]
¡û
>W1810067034
PDYN01000042
Bacillota
Sporosarcina sp. P16a [PDYN]
1246
1171
-
Thr
TGT
[ENA]
¡û
>W1810067088
PDYO01000039
Bacillota
Sporosarcina sp. P16b [PDYO]
516
591
+
Thr
TGT
[ENA]
¡û
>W1810067142
PDYP01000043
Bacillota
Sporosarcina sp. P17b [PDYP]
478
403
-
Thr
TGT
[ENA]
¡û
>W1810067197
PDYQ01000017
Bacillota
Sporosarcina sp. P18a [PDYQ]
1291
1216
-
Thr
TGT
[ENA]
¡û
>W1810067248
PDYR01000033
Bacillota
Sporosarcina sp. P19 [PDYR]
1249
1174
-
Thr
TGT
[ENA]
¡û
>W1810067297
PDYS01000046
Bacillota
Sporosarcina sp. P1 [PDYS]
508
583
+
Thr
TGT
[ENA]
¡û
>W1810067314
PDYT01000005
Bacillota
Sporosarcina sp. P20a [PDYT]
129386
129311
-
Thr
TGT
[ENA]
¡û
>W1810067406
PDYU01000049
Bacillota
Sporosarcina sp. P21c [PDYU]
510
585
+
Thr
TGT
[ENA]
¡û
>W1810067457
PDYV01000042
Bacillota
Sporosarcina sp. P25 [PDYV]
725
650
-
Thr
TGT
[ENA]
¡û
>W1810067512
PDYW01000066
Bacillota
Sporosarcina sp. P26b [PDYW]
851
776
-
Thr
TGT
[ENA]
¡û
>W1810067568
PDYX01000050
Bacillota
Sporosarcina sp. P29 [PDYX]
507
582
+
Thr
TGT
[ENA]
¡û
>W1810067622
PDYY01000032
Bacillota
Sporosarcina sp. P2 [PDYY]
885
810
-
Thr
TGT
[ENA]
¡û
>W1810067678
PDYZ01000057
Bacillota
Sporosarcina sp. P30 [PDYZ]
882
807
-
Thr
TGT
[ENA]
¡û
>W1810067724
PDZA01000039
Bacillota
Sporosarcina sp. P31 [PDZA]
16202
16127
-
Thr
TGT
[ENA]
¡û
>W1810067793
PDZB01000055
Bacillota
Sporosarcina sp. P32b [PDZB]
512
587
+
Thr
TGT
[ENA]
¡û
>W1810067839
PDZC01000023
Bacillota
Sporosarcina sp. P34 [PDZC]
959
884
-
Thr
TGT
[ENA]
¡û
>W1810067885
PDZD01000061
Bacillota
Sporosarcina sp. P35 [PDZD]
1106
1031
-
Thr
TGT
[ENA]
¡û
>W1810067944
PDZE01000032
Bacillota
Sporosarcina sp. P3 [PDZE]
304
379
+
Thr
TGT
[ENA]
¡û
>W1810067994
PDZF01000033
Bacillota
Sporosarcina sp. P7 [PDZF]
1243
1168
-
Thr
TGT
[ENA]
¡û
>W1810156816
PJBN01000002
Bacillota
Planococcus sp. MB-3u-09 [PJBN]
103
178
+
Thr
TGT
[ENA]
¡û
>W1810156841
PJBN01000043
Bacillota
Planococcus sp. MB-3u-09 [PJBN]
741
666
-
Thr
TGT
[ENA]
¡û
>W1810156874
PJBO01000019
Bacillota
Planomicrobium sp. MB-3u-38 [PJBO]
100
175
+
Thr
TGT
[ENA]
¡û
>W1810156896
PJBO01000071
Bacillota
Planomicrobium sp. MB-3u-38 [PJBO]
106
181
+
Thr
TGT
[ENA]
¡û
>W1810157624
PJCB01000006
Bacillota
Planococcus sp. Urea-3u-39 [PJCB]
9394
9319
-
Thr
TGT
[ENA]
¡û
>W1810157635
PJCB01000015
Bacillota
Planococcus sp. Urea-3u-39 [PJCB]
157
232
+
Thr
TGT
[ENA]
¡û
>W1810157675
PJCC01000002
Bacillota
Planococcus sp. Urea-trap-24 [PJCC]
9394
9319
-
Thr
TGT
[ENA]
¡û
>W1810157686
PJCC01000012
Bacillota
Planococcus sp. Urea-trap-24 [PJCC]
154
229
+
Thr
TGT
[ENA]
¡û
>W1810392877
PYAT01000027
Bacillota
Planomicrobium soli CGMCC 1.12259 [PYAT]
852
927
+
Thr
TGT
[ENA]
¡û
>W1810392888
PYAT01000031
Bacillota
Planomicrobium soli CGMCC 1.12259 [PYAT]
2103
2028
-
Thr
TGT
[ENA]
¡û
>W1810513990
QBUC01000043
Bacillota
Paenisporosarcina sp. OV554 [QBUC]
8951
8876
-
Thr
TGT
[ENA]
¡û
>W1810698338
QLZQ01000006
Bacillota
Planococcus maitriensis S1 [QLZQ]
177825
177750
-
Thr
TGT
[ENA]
¡û
>W1810698349
QLZQ01000008
Bacillota
Planococcus maitriensis S1 [QLZQ]
2
77
+
Thr
TGT
[ENA]
¡û
>W1810698388
QLZR01000007
Bacillota
Planococcus halotolerans SCU63 [QLZR]
182824
182749
-
Thr
TGT
[ENA]
¡û
>W1810698399
QLZR01000008
Bacillota
Planococcus halotolerans SCU63 [QLZR]
91
166
+
Thr
TGT
[ENA]
¡û
>W1810762643
QQAK01000013
Bacillota
Sporosarcina sp. BI001-red [QQAK]
635
710
+
Thr
TGT
[ENA]
¡û
>W1810783003
QQRS01000001
Bacillota
Planomicrobium okeanokoites IFO 12536 [QQRS]
91
166
+
Thr
TGT
[ENA]
¡û
>W1810783040
QQRS01000006
Bacillota
Planomicrobium okeanokoites IFO 12536 [QQRS]
128303
128228
-
Thr
TGT
[ENA]
¡û
>W1810783077
QQRT01000057
Bacillota
Planococcus salinarum ISL-16 [QQRT]
2440
2365
-
Thr
TGT
[ENA]
¡û
>W1810783103
QQRT01000060
Bacillota
Planococcus salinarum ISL-16 [QQRT]
1176
1251
+
Thr
TGT
[ENA]
¡û
>W1510060910
CCXS01000001
Bacillota
Planococcus massiliensis ES2 [CCXS]
2432236
2432161
-
Thr
TGT
[ENA]
¡û
>W1510060922
CCXS01000001
Bacillota
Planococcus massiliensis ES2 [CCXS]
2234294
2234219
-
Thr
TGT
[ENA]
¡û
>W1510071758
CDGU01000006
Bacillota
Sporosarcina koreensis S-K12 [CDGU]
574
649
+
Thr
TGT
[ENA]
¡û
>W1510071789
CDGU01000008
Bacillota
Sporosarcina koreensis S-K12 [CDGU]
527860
527785
-
Thr
TGT
[ENA]
¡û
>W1511316119
JPVP01000016
Bacillota
Lysinibacillus odysseyi 34hs-1 = NBRC 100172 [JPVP]
1232
1307
+
Thr
TGT
[ENA]
¡û
>W1511693792
LGAF01000054
Bacillota
Planococcus glaciei UCD-HAM [LGAF]
1709
1634
-
Thr
TGT
[ENA]
¡û
>W1511693808
LGAF01000063
Bacillota
Planococcus glaciei UCD-HAM [LGAF]
761
686
-
Thr
TGT
[ENA]
¡û
>W11170967
AFPZ01000148
Bacillota
Sporosarcina newyorkensis 2681 [AFPZ]
610
685
+
Thr
TGT
[ENA]
¡û
>W11170974
AFPZ01000150
Bacillota
Sporosarcina newyorkensis 2681 [AFPZ]
415
490
+
Thr
TGT
[ENA]
¡û
>C161042959
CP012601
Bacillota
Bacillus sp. FJAT-22090 [CP012601]
281331
281406
+
Thr
TGT
[Ensembl]
¡û
>C161043004
CP012601
Bacillota
Bacillus sp. FJAT-22090 [CP012601]
3100047
3099972
-
Thr
TGT
[Ensembl]
¡û
>C161058665
CP013659
Bacillota
Planococcus rifietoensis M8 [CP013659]
765125
765200
+
Thr
TGT
[Ensembl]
¡û
>C161058678
CP013659
Bacillota
Planococcus rifietoensis M8 [CP013659]
958758
958833
+
Thr
TGT
[Ensembl]
¡û
>C161058700
CP013659
Bacillota
Planococcus rifietoensis M8 [CP013659]
3278395
3278470
+
Thr
TGT
[Ensembl]
¡û
>C161074451
CP014616
Bacillota
Sporosarcina psychrophila DSM 6497 [CP014616]
808120
808195
+
Thr
TGT
[Ensembl]
¡û
>C161074462
CP014616
Bacillota
Sporosarcina psychrophila DSM 6497 [CP014616]
1107294
1107369
+
Thr
TGT
[Ensembl]
¡û
>C161074484
CP014616
Bacillota
Sporosarcina psychrophila DSM 6497 [CP014616]
4582662
4582587
-
Thr
TGT
[Ensembl]
¡û
>C161098287
CP016534
Bacillota
Planococcus antarcticus DSM 14505 [CP016534]
3259415
3259340
-
Thr
TGT
[Ensembl]
¡û
>C161098299
CP016534
Bacillota
Planococcus antarcticus DSM 14505 [CP016534]
3061278
3061203
-
Thr
TGT
[Ensembl]
¡û
>C161098323
CP016534
Bacillota
Planococcus antarcticus DSM 14505 [CP016534]
486433
486358
-
Thr
TGT
[Ensembl]
¡û
>C161098356
CP016537
Bacillota
Planococcus halocryophilus DSM 24743 [CP016537]
106520
106595
+
Thr
TGT
[Ensembl]
¡û
>C161098420
CP016538
Bacillota
Planococcus maritimus DSM 17275 [CP016538]
267625
267700
+
Thr
TGT
[Ensembl]
¡û
>C161098455
CP016538
Bacillota
Planococcus maritimus DSM 17275 [CP016538]
1203216
1203291
+
Thr
TGT
[Ensembl]
¡û
>C161098467
CP016538
Bacillota
Planococcus maritimus DSM 17275 [CP016538]
1382109
1382184
+
Thr
TGT
[Ensembl]
¡û
>C161098499
CP016539
Bacillota
Planococcus plakortidis DSM 23997 [CP016539]
161728
161803
+
Thr
TGT
[Ensembl]
¡û
>C161098510
CP016539
Bacillota
Planococcus plakortidis DSM 23997 [CP016539]
352717
352792
+
Thr
TGT
[Ensembl]
¡û
>C161098532
CP016539
Bacillota
Planococcus plakortidis DSM 23997 [CP016539]
2463868
2463943
+
Thr
TGT
[Ensembl]
¡û
>C161098597
CP016540
Bacillota
Planococcus versutus L10.15 [CP016540]
575030
574955
-
Thr
TGT
[Ensembl]
¡û
>W121071565
AJYB01000108
Bacillota
Planococcus antarcticus DSM 14505 [AJYB]
757
682
-
Thr
TGT
[ENA]
¡û
>W121111263
ALJG01000109
Bacillota
Paenisporosarcina sp. TG20 TG20 [ALJG]
1898
1823
-
Thr
TGT
[ENA]
¡û
>W1610073499
BCVX01000026
Bacillota
Lysinibacillus odysseyi 34hs-1 = NBRC 100172 [BCVX]
249
324
+
Thr
TGT
[ENA]
¡û
>W1610521075
JHDT01000018
Bacillota
Planococcus versutus L10.15 [JHDT]
39
114
+
Thr
TGT
[ENA]
¡û
>W1610650321
LJIY01000014
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
89
164
+
Thr
TGT
[ENA]
¡û
>W1610842579
LPUT01000015
Bacillota
Sporosarcina sp. HYO08 [LPUT]
1458
1383
-
Thr
TGT
[ENA]
¡û
>W1610842592
LPUT01000016
Bacillota
Sporosarcina sp. HYO08 [LPUT]
1458
1383
-
Thr
TGT
[ENA]
¡û
>W1610842605
LPUT01000017
Bacillota
Sporosarcina sp. HYO08 [LPUT]
922
847
-
Thr
TGT
[ENA]
¡û
>W1610927169
LTZG01000021
Bacillota
Planococcus maritimus [LTZG]
357076
357001
-
Thr
TGT
[ENA]
¡û
>W1610927196
LTZG01000041
Bacillota
Planococcus maritimus [LTZG]
982
1057
+
Thr
TGT
[ENA]
¡û
>W1710022904
AVCX01000046
Bacillota
Lysinibacillus odysseyi 34hs-1 = NBRC 100172 [AVCX]
1232
1307
+
Thr
TGT
[ENA]
¡û
>W1710070617
BCVX01000026
Bacillota
Lysinibacillus odysseyi 34hs-1 = NBRC 100172 [BCVX]
249
324
+
Thr
TGT
[ENA]
¡û
>W1710517148
FNDC01000010
Bacillota
Planococcus glaciei [FNDC]
11
86
+
Thr
TGT
[ENA]
¡û
>W1710552590
FOGY01000005
Bacillota
Psychrobacillus sp. OK032 [FOGY]
330031
329956
-
Thr
TGT
[ENA]
¡û
>W1710552623
FOGY01000036
Bacillota
Psychrobacillus sp. OK032 [FOGY]
1136
1061
-
Thr
TGT
[ENA]
¡û
>W1710552635
FOGY01000040
Bacillota
Psychrobacillus sp. OK032 [FOGY]
890
815
-
Thr
TGT
[ENA]
¡û
>W1710569557
FOUN01000013
Bacillota
Psychrobacillus psychrodurans [FOUN]
209
284
+
Thr
TGT
[ENA]
¡û
>W1710602656
FUYJ01000006
Bacillota
Sporosarcina newyorkensis [FUYJ]
215624
215549
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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