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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282908 (48 seq.)
>W1710853386
LLWP01000005
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
159797
159724
-
Thr
TGT
[ENA]
¡û
>W1710870418
LMKM01000018
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
28088
28015
-
Thr
TGT
[ENA]
¡û
>W1710870432
LMKM01000037
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
163081
163008
-
Thr
TGT
[ENA]
¡û
>W1711047597
LRPC01000028
Bacteroidota
Roseivirga spongicola [LRPC]
711050
710977
-
Thr
TGT
[ENA]
¡û
>W1711047598
LRPC01000028
Bacteroidota
Roseivirga spongicola [LRPC]
710938
710863
-
Thr
TGT
[ENA]
¡û
>W1711356784
MDGP01000001
Bacteroidota
Roseivirga sp. 4D4 4D4 [MDGP]
1302463
1302390
-
Thr
TGT
[ENA]
¡û
>W1711356812
MDGQ01000005
Bacteroidota
Roseivirga misakiensis [MDGQ]
1331424
1331497
+
Thr
TGT
[ENA]
¡û
>W1711360552
MDJS01000001
Bacteroidota
Mucilaginibacter sp. PPCGB 2223 [MDJS]
2337750
2337677
-
Thr
TGT
[ENA]
¡û
>WENV180030495
FTJM01122054
[FTJM] metagenome; soil
212
139
-
Thr
TGT
[ENA]
¢þ
>WENV180391229
OBPM01047795
[OBPM] marine metagenome; ENVO:00002010
244
317
+
Thr
TGT
[ENA]
¢þ
>WENV181839012
OGVN01052038
[OGVN] freshwater metagenome; freshwater
257
330
+
Thr
TGT
[ENA]
¢þ
>WENV181841199
OGVR01001053
[OGVR] freshwater metagenome; freshwater
1981
2056
+
Thr
TGT
[ENA]
¢þ
>WENV181844196
OGVV01019789
[OGVV] freshwater metagenome; freshwater
137
212
+
Thr
TGT
[ENA]
¢þ
>W141187587
AYMG01000010
Bacteroidota
Pedobacter jeongneungensis H1ai [AYMG]
389823
389750
-
Thr
TGT
[ENA]
¡û
>W141187611
AYMG01000025
Bacteroidota
Pedobacter jeongneungensis H1ai [AYMG]
108100
108027
-
Thr
TGT
[ENA]
¡û
>WENV183092196
OLKV01000251
[OLKV] soil metagenome; soil
1836
1909
+
Thr
TGT
[ENA]
¢þ
>WENV183735292
PJUA01008604
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
815
888
+
Thr
TGT
[ENA]
¢þ
>WENV170011322
APMI01055975
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2170
2243
+
Thr
TGT
[ENA]
¢þ
>C181001406
AP017313
Bacteroidota
Mucilaginibacter gotjawali SA3-7 [AP017313]
3992986
3992913
-
Thr
TGT
-
¡û
>C181071981
CP022743
Bacteroidota
Mucilaginibacter xinganensis BJC16-A31 [CP022743]
1866367
1866440
+
Thr
TGT
-
¡û
>C191157510
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
634991
635064
+
Thr
TGT
-
¡û
>C191157522
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
2318950
2319023
+
Thr
TGT
-
¡û
>W1910939695
NJAG01000002
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
84339
84266
-
Thr
TGT
[ENA]
¡û
>W1911647659
QAJQ01000014
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
86301
86228
-
Thr
TGT
[ENA]
¡û
>W1911647664
QAJQ01000018
Bacteroidota
Pedobacter sp. KBW01 [QAJQ]
37432
37359
-
Thr
TGT
[ENA]
¡û
>W1810761057
QPKV01000003
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
567752
567825
+
Thr
TGT
[ENA]
¡û
>W1810761070
QPKV01000004
Bacteroidota
Pedobacter chinensis JDX94 [QPKV]
544293
544366
+
Thr
TGT
[ENA]
¡û
>W11138421
AEIH01000176
Bacteroidota
Mucilaginibacter paludis DSM 18603 [AEIH]
98597
98524
-
Thr
TGT
[ENA]
¡û
>C161077150
CP014773
Bacteroidota
Mucilaginibacter sp. PAMC 26640 [CP014773]
2306096
2306169
+
Thr
TGT
[Ensembl]
¡û
>W1610612083
LGEK01000052
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
4373
4300
-
Thr
TGT
[ENA]
¡û
>W1610716510
LLWP01000005
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
159797
159724
-
Thr
TGT
[ENA]
¡û
>W1610732764
LMKM01000018
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
28088
28015
-
Thr
TGT
[ENA]
¡û
>W1610732778
LMKM01000037
Bacteroidota
Pedobacter sp. Leaf216 [LMKM]
163081
163008
-
Thr
TGT
[ENA]
¡û
>W1610870265
LQZQ01000045
Bacteroidota
Roseivirga ehrenbergii [LQZQ]
303442
303517
+
Thr
TGT
[ENA]
¡û
>W1610888726
LRPC01000028
Bacteroidota
Roseivirga spongicola [LRPC]
711050
710977
-
Thr
TGT
[ENA]
¡û
>W1610888727
LRPC01000028
Bacteroidota
Roseivirga spongicola [LRPC]
710938
710863
-
Thr
TGT
[ENA]
¡û
>W1710512273
FMZH01000002
Bacteroidota
Pedobacter soli [FMZH]
13779
13852
+
Thr
TGT
[ENA]
¡û
>W1710512310
FMZH01000023
Bacteroidota
Pedobacter soli [FMZH]
10696
10769
+
Thr
TGT
[ENA]
¡û
>W1710513651
FNAI01000002
Bacteroidota
Mucilaginibacter pineti [FNAI]
87655
87728
+
Thr
TGT
[ENA]
¡û
>W1710525880
FNJV01000011
Bacteroidota
Mucilaginibacter sp. OK268 [FNJV]
44240
44167
-
Thr
TGT
[ENA]
¡û
>W1710538693
FNUT01000006
Bacteroidota
Sphingobacterium lactis [FNUT]
263677
263604
-
Thr
TGT
[ENA]
¡û
>W1710538713
FNUT01000014
Bacteroidota
Sphingobacterium lactis [FNUT]
100826
100751
-
Thr
TGT
[ENA]
¡û
>W1710548305
FODR01000002
Bacteroidota
Mucilaginibacter sp. OK283 [FODR]
506817
506890
+
Thr
TGT
[ENA]
¡û
>W1710554776
FOIR01000002
Bacteroidota
Roseivirga pacifica pacificus [FOIR]
121753
121826
+
Thr
TGT
[ENA]
¡û
>W1710563350
FOPP01000006
Bacteroidota
Pedobacter insulae [FOPP]
131715
131642
-
Thr
TGT
[ENA]
¡û
>W1710592466
FRCM01000005
Bacteroidota
Mucilaginibacter sp. OK098 [FRCM]
549580
549653
+
Thr
TGT
[ENA]
¡û
>W1710595947
FTMG01000009
Bacteroidota
Mucilaginibacter lappiensis [FTMG]
206586
206659
+
Thr
TGT
[ENA]
¡û
>W1710733589
LGEK01000052
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
4373
4300
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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