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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283208 (53 seq.)
>W1710926982
LOEW01000019
Bacillota
Desulfosporosinus sp. BRH_c37 [LOEW]
6493
6568
+
Glu
TTC
[ENA]
¡û
>W1710927005
LOEW01000300
Bacillota
Desulfosporosinus sp. BRH_c37 [LOEW]
164
89
-
Glu
TTC
[ENA]
¡û
>W1711312250
MASS01000038
Bacillota
Desulfosporosinus sp. BG [MASS]
22456
22381
-
Glu
TTC
[ENA]
¡û
>W1711312260
MASS01000046
Bacillota
Desulfosporosinus sp. BG [MASS]
872
947
+
Glu
TTC
[ENA]
¡û
>W1711312272
MASS01000075
Bacillota
Desulfosporosinus sp. BG [MASS]
16471
16396
-
Glu
TTC
[ENA]
¡û
>W1711312274
MASS01000098
Bacillota
Desulfosporosinus sp. BG [MASS]
5397
5472
+
Glu
TTC
[ENA]
¡û
>W1711510561
MLBF01000001
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
169924
169849
-
Glu
TTC
[ENA]
¡û
>W1711510585
MLBF01000097
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
4962
5037
+
Glu
TTC
[ENA]
¡û
>W1711926245
NADJ01000003
Bacillota
Desulfosporosinus sp. FKB [NADJ]
5672
5747
+
Glu
TTC
[ENA]
¡û
>W1711926267
NADJ01000027
Bacillota
Desulfosporosinus sp. FKB [NADJ]
65692
65617
-
Glu
TTC
[ENA]
¡û
>W1711926280
NADJ01000036
Bacillota
Desulfosporosinus sp. FKB [NADJ]
200961
200886
-
Glu
TTC
[ENA]
¡û
>W1711932731
NAHZ01000019
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
2117
2042
-
Glu
TTC
[ENA]
¡û
>W1711932756
NAHZ01000032
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
123830
123905
+
Glu
TTC
[ENA]
¡û
>W1711932775
NAHZ01000033
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
273226
273301
+
Glu
TTC
[ENA]
¡û
>WENV183670120
ORJL010910202
[ORJL] groundwater metagenome; groundwater
204
129
-
Glu
TTC
[ENA]
¢þ
>WENV183671650
ORJL011085100
[ORJL] groundwater metagenome; groundwater
3796
3721
-
Glu
TTC
[ENA]
¢þ
>WENV170658852
JUEG02001262
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
2740
2665
-
Glu
TTC
[ENA]
¢þ
>WENV170658867
JUEG02001270
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
223185
223110
-
Glu
TTC
[ENA]
¢þ
>WENV170658878
JUEG02001273
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
2780
2855
+
Glu
TTC
[ENA]
¢þ
>WENV170658911
JUEG02001343
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
133422
133497
+
Glu
TTC
[ENA]
¢þ
>W1810047152
OMOF01000012
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
4292
4367
+
Glu
TTC
[ENA]
¡û
>W1810047178
OMOF01000119
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
11715
11640
-
Glu
TTC
[ENA]
¡û
>C151016317
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
3145044
3144969
-
Glu
TTC
[Ensembl]
¡û
>C151016325
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2540047
2539972
-
Glu
TTC
[Ensembl]
¡û
>C151016327
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2175092
2175017
-
Glu
TTC
[Ensembl]
¡û
>C151016341
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2173335
2173260
-
Glu
TTC
[Ensembl]
¡û
>W1511327351
JQID01000098
Bacillota
Desulfosporosinus sp. Tol-M [JQID]
3801
3726
-
Glu
TTC
[ENA]
¡û
>W1511430031
JUEE01000046
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
93715
93790
+
Glu
TTC
[ENA]
¡û
>W1511430039
JUEE01000068
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
655
580
-
Glu
TTC
[ENA]
¡û
>W1511533692
JYNH01000154
Bacillota
Desulfosporosinus sp. I2 [JYNH]
8844
8919
+
Glu
TTC
[ENA]
¡û
>W1511644707
LDXJ01000036
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
21365
21440
+
Glu
TTC
[ENA]
¡û
>W1511646018
LDZY01000011
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
157923
157848
-
Glu
TTC
[ENA]
¡û
>W1511646035
LDZY01000036
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
4435
4510
+
Glu
TTC
[ENA]
¡û
>W11181320
AGJA01000001
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
112516
112441
-
Glu
TTC
[ENA]
¡û
>W11181350
AGJA01000012
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
3470
3395
-
Glu
TTC
[ENA]
¡û
>W11181354
AGJA01000014
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
486
561
+
Glu
TTC
[ENA]
¡û
>W11181367
AGJA01000017
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
2476
2401
-
Glu
TTC
[ENA]
¡û
>W11181386
AGJA01000034
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
178
103
-
Glu
TTC
[ENA]
¡û
>W11181397
AGJB01000003
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
248519
248594
+
Glu
TTC
[ENA]
¡û
>W11181404
AGJB01000007
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
8236
8311
+
Glu
TTC
[ENA]
¡û
>W11181414
AGJB01000019
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
165
90
-
Glu
TTC
[ENA]
¡û
>W11181424
AGJB01000029
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
1815
1740
-
Glu
TTC
[ENA]
¡û
>C121014842
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
102978
103053
+
Glu
TTC
[Ensembl]
¡û
>W121010485
AGJG01000050
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
2754
2829
+
Glu
TTC
[ENA]
¡û
>W121036115
AHLV01000001
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
124034
124109
+
Glu
TTC
[ENA]
¡û
>W121036154
AHLV01000002
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
1927074
1926999
-
Glu
TTC
[ENA]
¡û
>W121036177
AHLV01000003
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
79350
79275
-
Glu
TTC
[ENA]
¡û
>W121036183
AHLV01000004
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
311261
311186
-
Glu
TTC
[ENA]
¡û
>W1610784524
LOEW01000019
Bacillota
Desulfosporosinus sp. BRH_c37 [LOEW]
6493
6568
+
Glu
TTC
[ENA]
¡û
>W1610784547
LOEW01000300
Bacillota
Desulfosporosinus sp. BRH_c37 [LOEW]
164
89
-
Glu
TTC
[ENA]
¡û
>W1710516458
FNCP01000006
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
132105
132180
+
Glu
TTC
[ENA]
¡û
>W1710516482
FNCP01000032
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
49434
49359
-
Glu
TTC
[ENA]
¡û
>W1710516504
FNCP01000054
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
2439
2364
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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