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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283270 (37 seq.)
>WENV180046418
MPLT02094121
[MPLT] marine metagenome; 70 m water sample filtered on 0.2 um supor filter
4778
4854
+
Asp
GTC
[ENA]
¡û
>WENV180054646
MPLV02104594
[MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter
1519
1595
+
Asp
GTC
[ENA]
¡û
>WENV180055482
MPLV02162875
[MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter
41
115
+
Asp
GTC
[ENA]
¡û
>WENV180056027
MPLW02004566
[MPLW] marine metagenome; 110 m water sample filtered on 0.2 um supor filter
654
578
-
Asp
GTC
[ENA]
¡û
>WENV180057300
MPLW02094290
[MPLW] marine metagenome; 110 m water sample filtered on 0.2 um supor filter
6687
6611
-
Asp
GTC
[ENA]
¡û
>WENV180059540
MPLX02117515
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
829
905
+
Asp
GTC
[ENA]
¡û
>WENV180059717
MPLX02128250
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
2427
2503
+
Asp
GTC
[ENA]
¡û
>WENV180060726
MPLX02185740
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
219
145
-
Asp
GTC
[ENA]
¡û
>WENV180060739
MPLX02186247
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
512
588
+
Asp
GTC
[ENA]
¡û
>WENV180061096
MPLX02207164
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
77
1
-
Asp
GTC
[ENA]
¡û
>WENV180062187
MPLX02270466
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
706
632
-
Asp
GTC
[ENA]
¡û
>WENV180064424
MPLX02416185
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
58
132
+
Asp
GTC
[ENA]
¡û
>WENV180066349
MPLY02125307
[MPLY] marine metagenome; 140 m water sample filtered on 0.2 um supor filter
479
405
-
Asp
GTC
[ENA]
¡û
>WENV180076159
MPMA02261829
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
562
486
-
Asp
GTC
[ENA]
¡û
>WENV180080559
MPMC02028555
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
465
389
-
Asp
GTC
[ENA]
¡û
>WENV180081482
MPMC02120580
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
668
744
+
Asp
GTC
[ENA]
¡û
>WENV180081947
MPMC02166717
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
889
813
-
Asp
GTC
[ENA]
¡û
>WENV180082262
MPMC02201940
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
870
794
-
Asp
GTC
[ENA]
¡û
>WENV180083237
MPMD02030105
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
218
292
+
Asp
GTC
[ENA]
¡û
>WENV180083650
MPMD02091336
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
1936
1860
-
Asp
GTC
[ENA]
¡û
>WENV180084060
MPMD02141518
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
140
64
-
Asp
GTC
[ENA]
¡û
>WENV180084741
MPMD02234096
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
3713
3789
+
Asp
GTC
[ENA]
¡û
>WENV180087163
MPME02060411
[MPME] marine metagenome; 150 m water sample filtered on 30 um supor filter
646
570
-
Asp
GTC
[ENA]
¡û
>WENV180087261
MPME02071415
[MPME] marine metagenome; 150 m water sample filtered on 30 um supor filter
1316
1240
-
Asp
GTC
[ENA]
¡û
>WENV180088495
MPMF02032331
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
98
22
-
Asp
GTC
[ENA]
¡û
>WENV180089603
MPMF02092579
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
897
823
-
Asp
GTC
[ENA]
¡û
>WENV180091460
MPMF02196492
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
2341
2267
-
Asp
GTC
[ENA]
¡û
>WENV183799775
PVBE010537456
[PVBE] marine metagenome; water
2352
2428
+
Asp
GTC
[ENA]
¡û
>WENV183804204
PVBE010909102
[PVBE] marine metagenome; water
16
92
+
Asp
GTC
[ENA]
¡û
>WENV183805611
PVBE011036561
[PVBE] marine metagenome; water
291
367
+
Asp
GTC
[ENA]
¡û
>WENV170395808
CEUC01142851
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
630
554
-
Asp
GTC
[ENA]
¡û
>WENV170600207
FUWD010114283
[FUWD] metagenome; unknown
80
154
+
Asp
GTC
[ENA]
¡û
>WENV170610908
FUWD012119854
[FUWD] metagenome; unknown
197
273
+
Asp
GTC
[ENA]
¡û
>WENV170617113
FUWD012914659
[FUWD] metagenome; unknown
454
530
+
Asp
GTC
[ENA]
¡û
>WENV170877347
MDTC01056194
[MDTC] marine metagenome; seawater
894
818
-
Asp
GTC
[ENA]
¡û
>WENV170945472
MDUP01016239
[MDUP] marine metagenome; 85 m water sample from station 6
411
337
-
Asp
GTC
[ENA]
¡û
>WENV170945522
MDUP01019354
[MDUP] marine metagenome; 85 m water sample from station 6
135
211
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK