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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283292 (12 seq.)
>WENV180118636
OASD01000204
[OASD] human gut metagenome; ENVO:feces
15618
15693
+
His
GTG
[ENA]
¢þ
>WENV180403399
OBRT01000095
[OBRT] human gut metagenome; ENVO:feces
17540
17465
-
His
GTG
[ENA]
¢þ
>WENV180405398
OBTM01003989
[OBTM] human gut metagenome; ENVO:feces
1519
1594
+
His
GTG
[ENA]
¢þ
>WENV180597207
OCPK01009684
[OCPK] human gut metagenome; ENVO:feces
306
231
-
His
GTG
[ENA]
¢þ
>WENV180786246
ODIR01133536
[ODIR] human metagenome; G_DNA_Stool
307
232
-
His
GTG
[ENA]
¢þ
>WENV181774567
OGRE01042795
[OGRE] human gut metagenome; faeces
577
502
-
His
GTG
[ENA]
¢þ
>C08003197
CP000776
Campylobacterota
Campylobacter hominis ATCC BAA-381 [CP000776]
1352851
1352779
-
His
GTG
[Ensembl]
¡û
>C181038862
CP019682
Campylobacterota
Campylobacter sputorum aubsp. sputorum RM3237 [CP019682]
1256192
1256117
-
His
GTG
-
¡û
>C181038907
CP019683
Campylobacterota
Campylobacter sputorum bv. faecalis CCUG 20703 [CP019683]
1299317
1299242
-
His
GTG
-
¡û
>C181038952
CP019684
Campylobacterota
Campylobacter sputorum bv. paraureolyticus LMG 11764 LMG 17589 [CP019684]
1268623
1268548
-
His
GTG
-
¡û
>C181038996
CP019685
Campylobacterota
Campylobacter sputorum RM8705 [CP019685]
1219531
1219456
-
His
GTG
-
¡û
>W1511205859
JMTI01000008
Campylobacterota
Campylobacter sputorum biovar sputorum INTA08/209 [JMTI]
125386
125461
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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