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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283292 (11 seq.)
>WENV180730747
ODGV01018441
[ODGV] human metagenome; G_DNA_Stool
1133
1208
+
Thr
GGT
[ENA]
¡û
>WENV181674805
OGOP01000476
[OGOP] human gut metagenome; faeces
19198
19273
+
Thr
GGT
[ENA]
¡û
>WENV181696166
OGPD01000273
[OGPD] human gut metagenome; faeces
42152
42227
+
Thr
GGT
[ENA]
¡û
>WENV182127096
OHJU01004327
[OHJU] human gut metagenome; feces
1379
1454
+
Thr
GGT
[ENA]
¡û
>WENV182142621
OHKU01006273
[OHKU] human gut metagenome; feces
40
115
+
Thr
GGT
[ENA]
¡û
>WENV182202789
OHPO01053121
[OHPO] human gut metagenome; feces
144
69
-
Thr
GGT
[ENA]
¡û
>WENV182256155
OHTD01028250
[OHTD] human gut metagenome; feces
21
96
+
Thr
GGT
[ENA]
¡û
>WENV182706045
OJOV01023913
[OJOV] human gut metagenome; stool sample
247
322
+
Thr
GGT
[ENA]
¡û
>WENV183197840
OLPV01000153
[OLPV] human gut metagenome; faeces
42189
42264
+
Thr
GGT
[ENA]
¡û
>WENV183409355
OMAG01000129
[OMAG] human gut metagenome; feces
17359
17284
-
Thr
GGT
[ENA]
¡û
>WENV183458366
OMDM01008863
[OMDM] human gut metagenome; feces
2289
2364
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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