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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283310 (44 seq.)
>W1711019838
LQYG01000102
Bacillota
Heyndrickxia coagulans [LQYG]
37138
37063
-
Ala
GGC
[ENA]
¡û
>W1711019935
LQYH01000113
Bacillota
Heyndrickxia coagulans [LQYH]
12617
12689
+
Ala
GGC
[ENA]
¡û
>W1711019978
LQYI01000077
Bacillota
Heyndrickxia coagulans [LQYI]
30577
30502
-
Ala
GGC
[ENA]
¡û
>W1711020047
LQYJ01000122
Bacillota
Heyndrickxia coagulans [LQYJ]
18974
18902
-
Ala
GGC
[ENA]
¡û
>W1711048297
LRPN01000183
Bacillota
Heyndrickxia coagulans [LRPN]
6790
6718
-
Ala
GGC
[ENA]
¡û
>W131236568
AUMM01000012
Bacillota
Tuberibacillus calidus DSM 17572 [AUMM]
8212
8287
+
Ala
GGC
[ENA]
¡û
>C171069028
CP017888
Bacillota
Heyndrickxia coagulans BC-HY1 [CP017888]
1693482
1693407
-
Ala
GGC
-
¡û
>W131054109
ANAP01000135
Bacillota
Heyndrickxia coagulans XZL9 [ANAP]
13342
13417
+
Ala
GGC
[ENA]
¡û
>W131170661
ARFQ01000103
Bacillota
Heyndrickxia acidiproducens DSM 23148 [ARFQ]
52911
52983
+
Ala
GGC
[ENA]
¡û
>W131214809
ATUM01000055
Bacillota
Heyndrickxia coagulans DSM 1 = ATCC 7050 [ATUM]
12139
12214
+
Ala
GGC
[ENA]
¡û
>w022740
AAWV01000010
Bacillota
Heyndrickxia coagulans 36D1 [AAWV]
39455
39380
-
Ala
GGC
[ENA]
¡û
>W141003777
ADWW01000009
Bacillota
Bacillus methanolicus MGA3 [ADWW]
7564
7638
+
Ala
GGC
[ENA]
¡û
>W141169485
AXVW01000036
Bacillota
Heyndrickxia coagulans CSIL1 [AXVW]
12871
12943
+
Ala
GGC
[ENA]
¡û
>C181117309
CP025437
Bacillota
Heyndrickxia coagulans LA204 [CP025437]
2501957
2501885
-
Ala
GGC
-
¡û
>C181136971
CP026649
Bacillota
Heyndrickxia coagulans R11 [CP026649]
2494447
2494375
-
Ala
GGC
-
¡û
>C191138697
CP035305
Bacillota
Heyndrickxia coagulans IDCC1201 [CP035305]
1672920
1672848
-
Ala
GGC
-
¡û
>W1910281570
FQUB01000056
Bacillota
Heyndrickxia coagulans DSM 1 = ATCC 7050 [FQUB]
7246
7174
-
Ala
GGC
[ENA]
¡û
>W1910469619
FWYO01000024
Bacillota
Oceanobacillus senegalensis Marseille-P3587 [FWYO]
143699
143771
+
Ala
GGC
[ENA]
¡û
>W1911801956
QYTU02000036
Bacillota
Siminovitchia fortis DSM 16012 [QYTU]
1447
1519
+
Ala
GGC
[ENA]
¡û
>W1810756366
QPFA01000001
Bacillota
Heyndrickxia coagulans ZB29 [QPFA]
1302160
1302088
-
Ala
GGC
[ENA]
¡û
>W1810806584
QRUS01000004
Bacillota
Heyndrickxia coagulans AF24-21 [QRUS]
111282
111354
+
Ala
GGC
[ENA]
¡û
>W1810806859
QRUW01000029
Bacillota
Heyndrickxia coagulans AF24-19 [QRUW]
28983
29055
+
Ala
GGC
[ENA]
¡û
>C151033435
CP007739
Bacillota
Bacillus methanolicus MGA3 [CP007739]
2758236
2758310
+
Ala
GGC
[Ensembl]
¡û
>C151057925
CP009709
Bacillota
Heyndrickxia coagulans DSM 1 = ATCC 7050 [CP009709]
1190086
1190011
-
Ala
GGC
[Ensembl]
¡û
>C151070451
CP010525
Bacillota
Heyndrickxia coagulans HM-08 [CP010525]
1119326
1119401
+
Ala
GGC
[Ensembl]
¡û
>C151087800
CP011939
Bacillota
Heyndrickxia coagulans S-lac [CP011939]
3622397
3622322
-
Ala
GGC
[Ensembl]
¡û
>ENV09003696
ADGO01139178
Compost metagenome contig00001
46
118
+
Ala
GGC
[ENA]
¡û
>C11102741
CP002472
Bacillota
Heyndrickxia coagulans 2-6 [CP002472]
2175180
2175105
-
Ala
GGC
[Ensembl]
¡û
>C11102803
CP003056
Bacillota
Heyndrickxia coagulans 36D1 [CP003056]
2536983
2537055
+
Ala
GGC
[Ensembl]
¡û
>W1511312749
JPSK01000118
Bacillota
Heyndrickxia coagulans GBI-30, 6086 [JPSK]
13318
13393
+
Ala
GGC
[ENA]
¡û
>W1511387993
JSVI01000076
Bacillota
Heyndrickxia coagulans P38 [JSVI]
466
394
-
Ala
GGC
[ENA]
¡û
>W1511595280
LBMQ01000064
Bacillota
Heyndrickxia coagulans NL01 [LBMQ]
6600
6528
-
Ala
GGC
[ENA]
¡û
>W11175752
AFWM01000135
Bacillota
Heyndrickxia coagulans XZL4 [AFWM]
3991
4066
+
Ala
GGC
[ENA]
¡û
>W1610027020
AVPG01000003
Bacillota
Pontibacillus litoralis JSM 072002 [AVPG]
33247
33175
-
Ala
GGC
[ENA]
¡û
>W121003652
AFEU01000002
Bacillota
Bacillus methanolicus PB1 [AFEU]
989888
989815
-
Ala
GGC
[ENA]
¡û
>W121104774
ALAS01000124
Bacillota
Heyndrickxia coagulans DSM 1 = ATCC 7050 [ALAS]
7039
6964
-
Ala
GGC
[ENA]
¡û
>W1610574014
JZDH01000045
Bacillota
Heyndrickxia coagulans [JZDH]
13386
13461
+
Ala
GGC
[ENA]
¡û
>W1610868126
LQYG01000102
Bacillota
Heyndrickxia coagulans [LQYG]
37138
37063
-
Ala
GGC
[ENA]
¡û
>W1610868223
LQYH01000113
Bacillota
Heyndrickxia coagulans [LQYH]
12617
12689
+
Ala
GGC
[ENA]
¡û
>W1610868266
LQYI01000077
Bacillota
Heyndrickxia coagulans [LQYI]
30577
30502
-
Ala
GGC
[ENA]
¡û
>W1610868335
LQYJ01000122
Bacillota
Heyndrickxia coagulans [LQYJ]
18974
18902
-
Ala
GGC
[ENA]
¡û
>W1610889426
LRPN01000183
Bacillota
Heyndrickxia coagulans [LRPN]
6790
6718
-
Ala
GGC
[ENA]
¡û
>W1710023185
AVPG01000003
Bacillota
Pontibacillus litoralis JSM 072002 [AVPG]
33247
33175
-
Ala
GGC
[ENA]
¡û
>W1710686793
JZDH01000045
Bacillota
Heyndrickxia coagulans [JZDH]
13386
13461
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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