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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283315 (29 seq.)
>W1710810745
LKHR01000132
Gammaproteobacteria
Vibrio fluvialis [LKHR]
184
108
-
Arg
CCT
[ENA]
¡û
>W1710810774
LKHS01000013
Gammaproteobacteria
Vibrio furnissii [LKHS]
20757
20833
+
Arg
CCT
[ENA]
¡û
>C171089380
CP019118
Gammaproteobacteria
Vibrio fluvialis 12605 [CP019118, CP019119]
678478
678402
-
Arg
CCT
-
¡û
>W131203157
ASXT01000013
Gammaproteobacteria
Vibrio fluvialis I21563 [ASXT]
206
130
-
Arg
CCT
[ENA]
¡û
>W131205574
ATEV01000018
Gammaproteobacteria
Vibrio paracholerae VCC19 [ATEV]
1174
1250
+
Arg
CCT
[ENA]
¡û
>W141238167
BBJY01000002
Gammaproteobacteria
Vibrio diazotrophicus NBRC 103148 [BBJY]
20647
20723
+
Arg
CCT
[ENA]
¡û
>WENV170657904
JTFP01031738
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
2469
2393
-
Arg
CCT
[ENA]
¢þ
>C181014545
CP014033
Gammaproteobacteria
Vibrio fluvialis FDAARGOS_100 [CP014032, CP014033]
2331965
2331889
-
Arg
CCT
-
¡û
>C191184606
CP040990
Gammaproteobacteria
Vibrio furnissii FDAARGOS_777 [CP040990, CP040991]
2954889
2954965
+
Arg
CCT
-
¡û
>W1810110813
PHIF01000031
Gammaproteobacteria
Vibrio fluvialis QY27 [PHIF]
15217
15141
-
Arg
CCT
[ENA]
¡û
>W1810222308
POSH01000003
Gammaproteobacteria
Vibrio diazotrophicus 60.6B [POSH]
20990
21066
+
Arg
CCT
[ENA]
¡û
>W1810222382
POSI01000008
Gammaproteobacteria
Vibrio diazotrophicus 60.6F [POSI]
21609
21685
+
Arg
CCT
[ENA]
¡û
>W1810222441
POSJ01000008
Gammaproteobacteria
Vibrio diazotrophicus 60.18M [POSJ]
172619
172543
-
Arg
CCT
[ENA]
¡û
>W1810222499
POSK01000005
Gammaproteobacteria
Vibrio diazotrophicus 60.27F [POSK]
261233
261157
-
Arg
CCT
[ENA]
¡û
>W1810222571
POSL01000012
Gammaproteobacteria
Vibrio diazotrophicus 65.7M [POSL]
21614
21690
+
Arg
CCT
[ENA]
¡û
>W1810222635
POSM01000013
Gammaproteobacteria
Vibrio diazotrophicus 65.10M [POSM]
21210
21286
+
Arg
CCT
[ENA]
¡û
>SRA1004845
SRR006906.160875
metagenomic water samples (SRP000427)
149
225
+
Arg
CCT
[SRA]
>SRA1005048
SRR006906.239951
metagenomic water samples (SRP000427)
149
225
+
Arg
CCT
[SRA]
>W1810696924
QLTR01000034
Gammaproteobacteria
Vibrio diazotrophicus 99A [QLTR]
409
333
-
Arg
CCT
[ENA]
¡û
>W10107661
ACZP01000012
Gammaproteobacteria
Vibrio furnissii CIP 102972 [ACZP]
163342
163418
+
Arg
CCT
[ENA]
¡û
>W11110048
ACZP01000012
Gammaproteobacteria
Vibrio furnissii CIP 102972 [ACZP]
163342
163418
+
Arg
CCT
[ENA]
¡û
>W1511403737
JTLJ01000031
Gammaproteobacteria
Vibrio fluvialis ZOR0035 [JTLJ]
53457
53381
-
Arg
CCT
[ENA]
¡û
>C11123484
CP002377
Gammaproteobacteria
Vibrio furnissii NCTC 11218 [CP002377, CP002378]
1166216
1166140
-
Arg
CCT
[Ensembl]
¡û
>W1511517692
JXXQ01000005
Gammaproteobacteria
Vibrio fluvialis 3663 [JXXQ]
11097
11021
-
Arg
CCT
[ENA]
¡û
>C161065414
CP014035
Gammaproteobacteria
Vibrio fluvialis ATCC 33809 [CP014034, CP014035]
387191
387115
-
Arg
CCT
-
¡û
>W1610077740
BCZR01000016
Gammaproteobacteria
Vibrio fluvialis NBRC 103150 [BCZR]
21342
21418
+
Arg
CCT
[ENA]
¡û
>W1610674800
LKHR01000132
Gammaproteobacteria
Vibrio fluvialis [LKHR]
184
108
-
Arg
CCT
[ENA]
¡û
>W1610674829
LKHS01000013
Gammaproteobacteria
Vibrio furnissii [LKHS]
20757
20833
+
Arg
CCT
[ENA]
¡û
>W1710075378
BCZR01000016
Gammaproteobacteria
Vibrio fluvialis NBRC 103150 [BCZR]
21342
21418
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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