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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283435 (6 seq.)
>WENV180062603
MPLX02298003
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
626
549
-
Pro
GGG
[ENA]
¡û
>WENV180074928
MPMA02177205
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
267
344
+
Pro
GGG
[ENA]
¡û
>WENV183799562
PVBE010517940
[PVBE] marine metagenome; water
3100
3023
-
Pro
GGG
[ENA]
¡û
>WENV183809302
PVBE011374787
[PVBE] marine metagenome; water
86
9
-
Pro
GGG
[ENA]
¡û
>WENV170225137
CEQE01111168
[CEQE] marine metagenome genome assembly TARA_037_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
14414
14337
-
Pro
GGG
[ENA]
¡û
>WENV170610303
FUWD011813503
[FUWD] metagenome; unknown
103
26
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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