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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283460 (36 seq.)
>W1712110597
NJIX01000009
Betaproteobacteria
Achromobacter sp. HZ34 [NJIX]
217562
217486
-
Arg
TCT
[ENA]
¡û
>W1712110637
NJIY01000011
Betaproteobacteria
Achromobacter sp. HZ28 [NJIY]
217499
217423
-
Arg
TCT
[ENA]
¡û
>C171016582
CP012334
Betaproteobacteria
Bordetella sp. H567 [CP012334]
1406903
1406979
+
Arg
TCT
-
¡û
>C171115725
CP021108
Betaproteobacteria
Bordetella genomosp. 8 AU19157 [CP021108]
1509984
1510060
+
Arg
TCT
-
¡û
>C171115897
CP021111
Betaproteobacteria
Bordetella genomosp. 13 AU7206 [CP021111]
2707795
2707719
-
Arg
TCT
-
¡û
>WENV180026654
FTIU01010985
[FTIU] metagenome; soil
870
794
-
Arg
TCT
[ENA]
¢þ
>WENV180029732
FTJL01002358
[FTJL] metagenome; soil
2209
2133
-
Arg
TCT
[ENA]
¢þ
>W141139286
AWNL01000015
Betaproteobacteria
Bordetella trematum CCUG 13902 [AWNL]
12178
12102
-
Arg
TCT
[ENA]
¡û
>C08001888
AM902716
Betaproteobacteria
Bordetella petrii DSM 12804 [AM902716]
3683557
3683484
-
Arg
TCT
[Ensembl]
¡û
>W141277451
JAEP01000006
Betaproteobacteria
Bordetella petrii J51 [JAEP]
388098
388174
+
Arg
TCT
[ENA]
¡û
>W141463892
JFJV02000035
Betaproteobacteria
Cupriavidus sp. SK-3 [JFJV]
10696
10620
-
Arg
TCT
[ENA]
¡û
>C181034359
CP018898
Betaproteobacteria
Bordetella trematum [CP018898]
3145235
3145159
-
Arg
TCT
-
¡û
>C191012248
CP016340
Betaproteobacteria
Bordetella trematum F581 [CP016340]
3282332
3282256
-
Arg
TCT
-
¡û
>W1910890718
NEVL01000004
Betaproteobacteria
Bordetella genomosp. 1 1 AU17610 [NEVL]
630466
630390
-
Arg
TCT
[ENA]
¡û
>W1910890787
NEVM01000005
Betaproteobacteria
Bordetella genomosp. 10 10 AU16122 [NEVM]
1263958
1263882
-
Arg
TCT
[ENA]
¡û
>W1910890832
NEVN01000009
Betaproteobacteria
Bordetella genomosp. 5 5 AU14646 [NEVN]
216647
216571
-
Arg
TCT
[ENA]
¡û
>W1910890874
NEVO01000012
Betaproteobacteria
Bordetella genomosp. 4 4 AU14378 [NEVO]
69245
69169
-
Arg
TCT
[ENA]
¡û
>W1910890926
NEVP01000011
Betaproteobacteria
Bordetella genomosp. 5 5 AU10456 [NEVP]
226916
226840
-
Arg
TCT
[ENA]
¡û
>W1910890960
NEVQ01000008
Betaproteobacteria
Bordetella genomosp. 4 4 AU9919 [NEVQ]
250227
250303
+
Arg
TCT
[ENA]
¡û
>W1910891048
NEVR01000006
Betaproteobacteria
Bordetella genomosp. 1 1 AU9795 [NEVR]
256225
256149
-
Arg
TCT
[ENA]
¡û
>W1910891066
NEVS01000002
Betaproteobacteria
Bordetella genomosp. 11 11 AU8856 [NEVS]
207835
207911
+
Arg
TCT
[ENA]
¡û
>W1910891127
NEVT01000006
Betaproteobacteria
Bordetella genomosp. 2 2 AU8256 [NEVT]
1290612
1290536
-
Arg
TCT
[ENA]
¡û
>W1910891195
NEVU01000003
Betaproteobacteria
Bordetella genomosp. 12 12 AU6712 [NEVU]
808881
808805
-
Arg
TCT
[ENA]
¡û
>W1911641141
PYAL01000006
Betaproteobacteria
Achromobacter aloeverae AVA-1 [PYAL]
468681
468757
+
Arg
TCT
[ENA]
¡û
>W1810596743
QGGT01000001
Betaproteobacteria
Cupriavidus plantarum SLV-132 [QGGT]
802490
802566
+
Arg
TCT
[ENA]
¡û
>W1810861211
QTTS01000001
Betaproteobacteria
Cupriavidus plantarum MA1-2za [QTTS]
1298663
1298587
-
Arg
TCT
[ENA]
¡û
>W1511310820
JPQP01000006
Betaproteobacteria
Bordetella trematum HR18 [JPQP]
4734
4810
+
Arg
TCT
[ENA]
¡û
>W1511534662
JYOD01000041
Betaproteobacteria
Burkholderiaceae bacterium 16 [JYOD]
46552
46476
-
Arg
TCT
[ENA]
¡û
>C161094151
CP016170
Betaproteobacteria
Bordetella bronchialis AU3182 [CP016170]
1478326
1478402
+
Arg
TCT
-
¡û
>C161094198
CP016171
Betaproteobacteria
Bordetella bronchialis AU17976 [CP016171]
1501404
1501480
+
Arg
TCT
[Ensembl]
¡û
>C161094273
CP016172
Betaproteobacteria
Bordetella flabilis AU10664 [CP016172]
4440700
4440624
-
Arg
TCT
[Ensembl]
¡û
>C161109113
LT546645
Betaproteobacteria
Bordetella trematum H044680328 [LT546645]
113550
113474
-
Arg
TCT
[Ensembl]
¡û
>W1610447544
FKBR01000031
Betaproteobacteria
Bordetella trematum [FKBR]
110471
110395
-
Arg
TCT
[ENA]
¡û
>W1610447661
FKBT01000035
Betaproteobacteria
Bordetella trematum [FKBT]
110430
110354
-
Arg
TCT
[ENA]
¡û
>W1710447172
FKBR01000031
Betaproteobacteria
Bordetella trematum [FKBR]
110471
110395
-
Arg
TCT
[ENA]
¡û
>W1710447289
FKBT01000035
Betaproteobacteria
Bordetella trematum [FKBT]
110430
110354
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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