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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283594 (33 seq.)
>WENV180709405
ODFJ01069076
[ODFJ] human metagenome; G_DNA_Tongue dorsum
174
249
+
Val
TAC
[ENA]
¡û
>WENV180728321
ODGU01038701
[ODGU] human metagenome; G_DNA_Supragingival plaque
170
245
+
Val
TAC
[ENA]
¡û
>WENV180757260
ODHW01000153
[ODHW] human metagenome; G_DNA_Tongue dorsum
35061
35136
+
Val
TAC
[ENA]
¡û
>WENV180769991
ODIG01290593
[ODIG] human metagenome; G_DNA_Tongue dorsum
24
99
+
Val
TAC
[ENA]
¡û
>WENV180774994
ODIJ01156021
[ODIJ] human metagenome; G_DNA_Tongue dorsum
54
129
+
Val
TAC
[ENA]
¡û
>WENV180791160
ODIT01132686
[ODIT] human metagenome; G_DNA_Tongue dorsum
279
204
-
Val
TAC
[ENA]
¡û
>WENV180793286
ODIW01014291
[ODIW] human metagenome; G_DNA_Tongue dorsum
227
302
+
Val
TAC
[ENA]
¡û
>WENV180815211
ODJP01000082
[ODJP] human metagenome; G_DNA_Tongue dorsum
19679
19754
+
Val
TAC
[ENA]
¡û
>WENV180835430
ODKE01003333
[ODKE] human metagenome; G_DNA_Supragingival plaque
4236
4311
+
Val
TAC
[ENA]
¡û
>WENV180855146
ODKX01037681
[ODKX] human metagenome; G_DNA_Tongue dorsum
539
464
-
Val
TAC
[ENA]
¡û
>WENV180861778
ODLE01011673
[ODLE] human metagenome; G_DNA_Tongue dorsum
76
151
+
Val
TAC
[ENA]
¡û
>WENV180880441
ODLZ01022709
[ODLZ] human metagenome; G_DNA_Tongue dorsum
33
108
+
Val
TAC
[ENA]
¡û
>WENV180882557
ODMC01000127
[ODMC] human metagenome; G_DNA_Tongue dorsum
17312
17387
+
Val
TAC
[ENA]
¡û
>WENV180897700
ODNI01059542
[ODNI] human metagenome; G_DNA_Tongue dorsum
386
311
-
Val
TAC
[ENA]
¡û
>WENV180900924
ODOJ01017252
[ODOJ] human metagenome; G_DNA_Tongue dorsum
736
811
+
Val
TAC
[ENA]
¡û
>WENV180922711
ODTJ01009119
[ODTJ] human metagenome; G_DNA_Supragingival plaque
211
286
+
Val
TAC
[ENA]
¡û
>WENV180939805
ODTX01094074
[ODTX] human metagenome; G_DNA_Supragingival plaque
89
14
-
Val
TAC
[ENA]
¡û
>WENV180945483
ODUC01179123
[ODUC] human metagenome; G_DNA_Supragingival plaque
295
220
-
Val
TAC
[ENA]
¡û
>WENV180948529
ODUG01001908
[ODUG] human metagenome; G_DNA_Tongue dorsum
12736
12661
-
Val
TAC
[ENA]
¡û
>WENV180984173
ODVF01142582
[ODVF] human metagenome; G_DNA_Supragingival plaque
296
221
-
Val
TAC
[ENA]
¡û
>WENV180985894
ODVJ01022172
[ODVJ] human metagenome; G_DNA_Tongue dorsum
1353
1278
-
Val
TAC
[ENA]
¡û
>WENV180991015
ODVN01012216
[ODVN] human metagenome; G_DNA_Tongue dorsum
385
460
+
Val
TAC
[ENA]
¡û
>WENV180998279
ODVT01000129
[ODVT] human metagenome; G_DNA_Buccal mucosa
30481
30406
-
Val
TAC
[ENA]
¡û
>WENV181009308
ODWE01050559
[ODWE] human metagenome; G_DNA_Supragingival plaque
340
265
-
Val
TAC
[ENA]
¡û
>WENV181038150
ODXQ01000478
[ODXQ] human metagenome; G_DNA_Tongue dorsum
698
773
+
Val
TAC
[ENA]
¡û
>WENV181042002
ODXS01104810
[ODXS] human metagenome; G_DNA_Tongue dorsum
273
198
-
Val
TAC
[ENA]
¡û
>WENV181095640
OEBY01014651
[OEBY] human metagenome; G_DNA_Tongue dorsum
1872
1947
+
Val
TAC
[ENA]
¡û
>WENV181102631
OECT01006165
[OECT] human metagenome; G_DNA_Tongue dorsum
691
766
+
Val
TAC
[ENA]
¡û
>WENV181104103
OECV01065807
[OECV] human metagenome; G_DNA_Throat
205
130
-
Val
TAC
[ENA]
¡û
>WENV181113278
OEEL01017717
[OEEL] human metagenome; G_DNA_Tongue dorsum
878
803
-
Val
TAC
[ENA]
¡û
>WENV181115578
OEEO01143570
[OEEO] human metagenome; G_DNA_Supragingival plaque
102
27
-
Val
TAC
[ENA]
¡û
>WENV181141720
OEGT01015144
[OEGT] human metagenome; G_DNA_Throat
86
161
+
Val
TAC
[ENA]
¡û
>WENV181151508
OEHW01063356
[OEHW] human metagenome; G_DNA_Tongue dorsum
57
132
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK