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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283727 (106 seq.)
>W1710915711
LNUL01000109
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis [LNUL]
4695
4621
-
Ala
TGC
[ENA]
¡û
>W1711093155
LTET01000061
Bacillota
Lactobacillus sp. HMSC066G01 [LTET]
146
72
-
Ala
TGC
[ENA]
¡û
>W1711098134
LTJI01000055
Bacillota
Lactobacillus sp. HMSC068B07 [LTJI]
157
231
+
Ala
TGC
[ENA]
¡û
>W131194920
ASRG01000042
Bacillota
Lactobacillus paragasseri K7 [ASRG]
146
220
+
Ala
TGC
[ENA]
¡û
>W1711588920
MODS01000034
Bacillota
Lacticaseibacillus casei [MODS]
1895
1969
+
Ala
TGC
[ENA]
¡û
>W1711744947
MUJA01000010
Bacillota
Lactobacillus gasseri [MUJA]
382
308
-
Ala
TGC
[ENA]
¡û
>W1711791001
MWIK01000045
Bacillota
Lactobacillus johnsonii [MWIK]
224
150
-
Ala
TGC
[ENA]
¡û
>W1712039806
NFJY01000018
Bacillota
Lactobacillus johnsonii [NFJY]
36808
36734
-
Ala
TGC
[ENA]
¡û
>C171118805
CP021427
Bacillota
Lactobacillus gasseri 4M13 [CP021427]
1055943
1056017
+
Ala
TGC
-
¡û
>C171118831
CP021427
Bacillota
Lactobacillus gasseri 4M13 [CP021427]
1300848
1300922
+
Ala
TGC
-
¡û
>WENV180129458
OATC01008790
[OATC] human gut metagenome; faeces
349
275
-
Ala
TGC
[ENA]
¢þ
>WENV180129480
OATC01013181
[OATC] human gut metagenome; faeces
167
239
+
Ala
TGC
[ENA]
¢þ
>WENV180352023
OBLQ010149557
[OBLQ] soil metagenome; soil
688
612
-
Ala
TGC
[ENA]
¢þ
>WENV180432598
OBWI01010230
[OBWI] human gut metagenome; faeces
244
318
+
Ala
TGC
[ENA]
¢þ
>WENV180448373
OBXE01019110
[OBXE] human gut metagenome; faeces
178
252
+
Ala
TGC
[ENA]
¢þ
>WENV180717289
ODGC01001577
[ODGC] human metagenome; G_DNA_Vaginal introitus
146
72
-
Ala
TGC
[ENA]
¢þ
>W141087803
AUUE01000003
Bacillota
Lactobacillus gasseri 2016 [AUUE]
161797
161723
-
Ala
TGC
[ENA]
¡û
>W141087806
AUUE01000003
Bacillota
Lactobacillus gasseri 2016 [AUUE]
156283
156209
-
Ala
TGC
[ENA]
¡û
>WENV180912608
ODSK01000244
[ODSK] human metagenome; G_DNA_Posterior fornix
186
111
-
Ala
TGC
[ENA]
¢þ
>WENV180914434
ODSW01006758
[ODSW] human metagenome; G_DNA_Posterior fornix
186
111
-
Ala
TGC
[ENA]
¢þ
>WENV181057233
ODYK01001282
[ODYK] human metagenome; G_DNA_Posterior fornix
186
111
-
Ala
TGC
[ENA]
¢þ
>WENV181187491
OENY01028856
[OENY] human gut metagenome; human gut
152
78
-
Ala
TGC
[ENA]
¢þ
>WENV181538699
OGHY01045696
[OGHY] metagenome; Human gut stool
54
128
+
Ala
TGC
[ENA]
¢þ
>WENV182495264
OITA01003269
[OITA] human gut metagenome; human gut
297
371
+
Ala
TGC
[ENA]
¢þ
>WENV183238683
OLQZ01006208
[OLQZ] human gut metagenome; faeces
58
132
+
Ala
TGC
[ENA]
¢þ
>WENV183511943
OMJG01019508
[OMJG] food metagenome; Cotija cheese
727
653
-
Ala
TGC
[ENA]
¢þ
>C181027251
CP017697
Bacillota
Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC [CP017697]
684133
684207
+
Ala
TGC
-
¡û
>C181027288
CP017697
Bacillota
Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC [CP017697]
1962992
1962918
-
Ala
TGC
-
¡û
>C181027701
CP017713
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM DSM 20001 [CP017713]
704672
704746
+
Ala
TGC
-
¡û
>C181027738
CP017713
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM DSM 20001 [CP017713]
1885718
1885644
-
Ala
TGC
-
¡û
>C181181859
CP029614
Bacillota
Lactobacillus johnsonii Byun-jo-01 [CP029614]
1429266
1429340
+
Ala
TGC
-
¡û
>C181181862
CP029614
Bacillota
Lactobacillus johnsonii Byun-jo-01 [CP029614]
1434781
1434855
+
Ala
TGC
-
¡û
>C181181865
CP029614
Bacillota
Lactobacillus johnsonii Byun-jo-01 [CP029614]
1440296
1440370
+
Ala
TGC
-
¡û
>C191034465
CP025428
Bacillota
Lacticaseibacillus rhamnosus LR-B1 [CP025428]
2566014
2565940
-
Ala
TGC
-
¡û
>C191034476
CP025428
Bacillota
Lacticaseibacillus rhamnosus LR-B1 [CP025428]
1926069
1925995
-
Ala
TGC
-
¡û
>C191035475
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
423608
423680
+
Ala
TGC
-
¡û
>C191035513
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
1825201
1825129
-
Ala
TGC
-
¡û
>C191078695
CP031701
Bacillota
Lactobacillus johnsonii IDCC9203 [CP031701]
1423265
1423339
+
Ala
TGC
-
¡û
>C191078698
CP031701
Bacillota
Lactobacillus johnsonii IDCC9203 [CP031701]
1428780
1428854
+
Ala
TGC
-
¡û
>C191078701
CP031701
Bacillota
Lactobacillus johnsonii IDCC9203 [CP031701]
1434295
1434369
+
Ala
TGC
-
¡û
>C191092794
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
366162
366236
+
Ala
TGC
-
¡û
>C191092832
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
1714198
1714124
-
Ala
TGC
-
¡û
>C191093477
CP032680
Bacillota
Lactobacillus johnsonii ZLJ010 [CP032680]
1912165
1912091
-
Ala
TGC
-
¡û
>C191093480
CP032680
Bacillota
Lactobacillus johnsonii ZLJ010 [CP032680]
1906648
1906574
-
Ala
TGC
-
¡û
>W09110994
ABWJ01000091
Bacillota
Lacticaseibacillus rhamnosus HN001 [ABWJ]
112
38
-
Ala
TGC
[ENA]
¡û
>W09123445
ACGY01000068
Bacillota
Lacticaseibacillus paracasei subsp. paracasei ATCC 25302 [ACGY]
131
205
+
Ala
TGC
[ENA]
¡û
>W1910177163
BJDN01000089
Bacillota
Loigolactobacillus binensis 735-2 [BJDN]
213
287
+
Ala
TGC
[ENA]
¡û
>W1910841772
NAES01000002
Bacillota
Loigolactobacillus backii VTT E-123217 [NAES]
1272032
1272106
+
Ala
TGC
[ENA]
¡û
>W1910841826
NAET01000008
Bacillota
Loigolactobacillus backii L101 [NAET]
157489
157415
-
Ala
TGC
[ENA]
¡û
>W1910901089
NGNV01000046
Bacillota
Lactobacillus taiwanensis 609u [NGNV]
222
148
-
Ala
TGC
[ENA]
¡û
>W1910901623
NGOF01000052
Bacillota
Lactobacillus johnsonii 117k [NGOF]
224
150
-
Ala
TGC
[ENA]
¡û
>W1910901772
NGOI01000043
Bacillota
Lactobacillus johnsonii 117a [NGOI]
224
150
-
Ala
TGC
[ENA]
¡û
>W1910901970
NGOM01000019
Bacillota
Lactobacillus taiwanensis 111z [NGOM]
222
148
-
Ala
TGC
[ENA]
¡û
>W1910902234
NGOR01000027
Bacillota
Lactobacillus taiwanensis 111k [NGOR]
222
148
-
Ala
TGC
[ENA]
¡û
>W1910902300
NGOS01000107
Bacillota
Lactobacillus taiwanensis 107v [NGOS]
222
148
-
Ala
TGC
[ENA]
¡û
>W1910902544
NGOX01000018
Bacillota
Lactobacillus taiwanensis 103n [NGOX]
222
148
-
Ala
TGC
[ENA]
¡û
>W1911595786
PNGP01000003
Bacillota
Lactobacillus iners UMB0033 [PNGP]
152148
152074
-
Ala
TGC
[ENA]
¡û
>W1911595864
PNGQ01000010
Bacillota
Lactobacillus iners UMB0030 [PNGQ]
388
462
+
Ala
TGC
[ENA]
¡û
>W1911595866
PNGQ01000011
Bacillota
Lactobacillus iners UMB0030 [PNGQ]
332
258
-
Ala
TGC
[ENA]
¡û
>W1810001347
BEXH01000016
Bacillota
Lactobacillus paragasseri JCM 5343 [BEXH]
282
356
+
Ala
TGC
[ENA]
¡û
>W1810190629
PKJZ01000024
Bacillota
Lactobacillus jensenii UMB0007 [PKJZ]
23013
23088
+
Ala
TGC
[ENA]
¡û
>W1810190687
PKKA01000044
Bacillota
Lactobacillus gasseri UMB0045 [PKKA]
1413
1487
+
Ala
TGC
[ENA]
¡û
>W1810472595
QAGX01000017
Bacillota
Lacticaseibacillus rhamnosus DS22_11 [QAGX]
353
279
-
Ala
TGC
[ENA]
¡û
>W1810473955
QAHU01000108
Bacillota
Lactobacillus sp. DS2_6 [QAHU]
236
162
-
Ala
TGC
[ENA]
¡û
>W1810488470
QAZJ01000036
Bacillota
Lacticaseibacillus rhamnosus DS3_11 [QAZJ]
574
500
-
Ala
TGC
[ENA]
¡û
>W1810598341
QGHW01000086
Bacillota
Limosilactobacillus reuteri LR8 [QGHW]
4265
4191
-
Ala
TGC
[ENA]
¡û
>W10113180
ADFT01000001
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
464
390
-
Ala
TGC
[ENA]
¡û
>W10113189
ADFT01000005
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
1069
1143
+
Ala
TGC
[ENA]
¡û
>W10113217
ADFT01000019
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
33449
33523
+
Ala
TGC
[ENA]
¡û
>W10113242
ADFT01000026
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
466
392
-
Ala
TGC
[ENA]
¡û
>C11112935
CP002464
Bacillota
Lactobacillus johnsonii DPC 6026 [CP002464]
1871112
1871038
-
Ala
TGC
[Ensembl]
¡û
>W11116407
ADFT01000001
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
464
390
-
Ala
TGC
[ENA]
¡û
>W11116416
ADFT01000005
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
1069
1143
+
Ala
TGC
[ENA]
¡û
>W11116444
ADFT01000019
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
33449
33523
+
Ala
TGC
[ENA]
¡û
>W11116469
ADFT01000026
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
466
392
-
Ala
TGC
[ENA]
¡û
>W1511437401
JUKW01000074
Bacillota
Lactobacillus gasseri 987_LJOH [JUKW]
81
155
+
Ala
TGC
[ENA]
¡û
>W1511441018
JUPZ01000057
Bacillota
Lacticaseibacillus casei 867_LCAS [JUPZ]
170
96
-
Ala
TGC
[ENA]
¡û
>W1511453097
JVEV01000025
Bacillota
Lactobacillus gasseri 497_LGAS [JVEV]
2134
2208
+
Ala
TGC
[ENA]
¡û
>W1511454656
JVGG01000011
Bacillota
Lactobacillus gasseri 459_LHEL [JVGG]
91
165
+
Ala
TGC
[ENA]
¡û
>W1511458149
JVIZ01000389
Bacillota
Lacticaseibacillus rhamnosus 390_LRHA [JVIZ]
3171
3097
-
Ala
TGC
[ENA]
¡û
>W11142116
AEOS01000394
Bacillota
Loigolactobacillus coryniformis subsp. torquens KCTC 3535 [AEOS]
95
21
-
Ala
TGC
[ENA]
¡û
>W11184975
BACQ01000099
Bacillota
Lacticaseibacillus zeae KCTC 3804 [BACQ]
107
33
-
Ala
TGC
[ENA]
¡û
>C161074713
CP014623
Bacillota
Loigolactobacillus backii TMW 1.1988 [CP014623]
623170
623244
+
Ala
TGC
-
¡û
>C161074745
CP014623
Bacillota
Loigolactobacillus backii TMW 1.1988 [CP014623]
1666115
1666041
-
Ala
TGC
-
¡û
>C161078999
CP014873
Bacillota
Loigolactobacillus backii TMW 1.1989 [CP014873]
1410383
1410457
+
Ala
TGC
[Ensembl]
¡û
>C161079013
CP014873
Bacillota
Loigolactobacillus backii TMW 1.1989 [CP014873]
1749009
1749083
+
Ala
TGC
[Ensembl]
¡û
>C161079066
CP014881
Bacillota
Loigolactobacillus backii TMW 1.1991 [CP014881]
623670
623744
+
Ala
TGC
-
¡û
>C161079099
CP014881
Bacillota
Loigolactobacillus backii TMW 1.1991 [CP014881]
1587756
1587682
-
Ala
TGC
-
¡û
>C161079145
CP014890
Bacillota
Loigolactobacillus backii TMW 1.1992 [CP014890]
1671006
1670932
-
Ala
TGC
-
¡û
>C161079159
CP014890
Bacillota
Loigolactobacillus backii TMW 1.1992 [CP014890]
1356820
1356746
-
Ala
TGC
-
¡û
>C161079206
CP014899
Bacillota
Loigolactobacillus backii TMW 1.2002 [CP014899]
2346125
2346051
-
Ala
TGC
-
¡û
>C161079220
CP014899
Bacillota
Loigolactobacillus backii TMW 1.2002 [CP014899]
2010890
2010816
-
Ala
TGC
-
¡û
>W121081276
AKFP01000203
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis CECT 5711 [AKFP]
116
190
+
Ala
TGC
[ENA]
¡û
>W121008343
AGBU01000142
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
95
23
-
Ala
TGC
[ENA]
¡û
>W1610031114
AYYO01000035
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [AYYO]
175
249
+
Ala
TGC
[ENA]
¡û
>W1610033541
AZDA01000073
Bacillota
Loigolactobacillus bifermentans DSM 20003 [AZDA]
149
75
-
Ala
TGC
[ENA]
¡û
>W1610033965
AZDJ01000005
Bacillota
Lacticaseibacillus nasuensis JCM 17158 [AZDJ]
158
232
+
Ala
TGC
[ENA]
¡û
>W1610529577
JQCE01000072
Bacillota
Lacticaseibacillus saniviri JCM 17471 = DSM 24301 [JQCE]
175
249
+
Ala
TGC
[ENA]
¡û
>W1610543455
JTHU01000001
Bacillota
Lacticaseibacillus rhamnosus [JTHU]
121
195
+
Ala
TGC
[ENA]
¡û
>W1610544261
JTIJ01000055
Bacillota
Lacticaseibacillus rhamnosus [JTIJ]
226
152
-
Ala
TGC
[ENA]
¡û
>WENV086549
BABG01000027
Gut microbiome of Human (healthy human sample In-R, Adult, Female)
3821
3744
-
Ala
TGC
[ENA]
>W1710028066
AYYO01000035
Bacillota
Lacticaseibacillus sharpeae JCM 1186 = DSM 20505 [AYYO]
175
249
+
Ala
TGC
[ENA]
¡û
>W1710030719
AZDA01000073
Bacillota
Loigolactobacillus bifermentans DSM 20003 [AZDA]
149
75
-
Ala
TGC
[ENA]
¡û
>W1710031092
AZDJ01000005
Bacillota
Lacticaseibacillus nasuensis JCM 17158 [AZDJ]
158
232
+
Ala
TGC
[ENA]
¡û
>W1710631167
JQCE01000072
Bacillota
Lacticaseibacillus saniviri JCM 17471 = DSM 24301 [JQCE]
175
249
+
Ala
TGC
[ENA]
¡û
>W1710735954
LGIZ01000019
Bacillota
Loigolactobacillus backii [LGIZ]
368
442
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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