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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283750 (42 seq.)
>W1711065106
LSBN01000005
Bacillota
Halanaerobium sp. T82-1 [LSBN]
62845
62770
-
Glu
TTC
[ENA]
¡û
>W131250011
CAUI01000004
Bacillota
Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 [CAUI]
1246
1321
+
Glu
TTC
[ENA]
¡û
>W131250025
CAUI01000015
Bacillota
Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 [CAUI]
84811
84886
+
Glu
TTC
[ENA]
¡û
>W1711431473
MIJU01000056
Bacillota
Halanaerobium sp. MDAL1 [MIJU]
2649
2724
+
Glu
TTC
[ENA]
¡û
>WENV170675461
LCWZ01082736
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
207
282
+
Glu
TTC
[ENA]
¢þ
>W1810486223
QAXS01000031
Bacillota
Halanaerobium saccharolyticum WC1 [QAXS]
35115
35040
-
Glu
TTC
[ENA]
¡û
>W1810503759
QBKJ01000001
Bacillota
Halanaerobium congolense WG5_pb [QBKJ]
1927473
1927398
-
Glu
TTC
[ENA]
¡û
>W1810503774
QBKJ01000001
Bacillota
Halanaerobium congolense WG5_pb [QBKJ]
274360
274285
-
Glu
TTC
[ENA]
¡û
>W1810628444
QICM01000030
Bacillota
Halanaerobium congolense MSL28 [QICM]
32311
32236
-
Glu
TTC
[ENA]
¡û
>W1810694629
QLME01000002
Bacillota
Halanaerobium saccharolyticum MSL 17.2 [QLME]
279255
279180
-
Glu
TTC
[ENA]
¡û
>W1810694635
QLME01000003
Bacillota
Halanaerobium saccharolyticum MSL 17.2 [QLME]
155969
155894
-
Glu
TTC
[ENA]
¡û
>W1810694669
QLME01000030
Bacillota
Halanaerobium saccharolyticum MSL 17.2 [QLME]
33540
33465
-
Glu
TTC
[ENA]
¡û
>W1810759187
QPJF01000026
Bacillota
Halanaerobium sp. ST460_2HS_T2 [QPJF]
33394
33319
-
Glu
TTC
[ENA]
¡û
>W1810759585
QPJN01000037
Bacillota
Halanaerobium sp. DL-01 [QPJN]
15290
15215
-
Glu
TTC
[ENA]
¡û
>C11110023
CP002304
Bacillota
Halanaerobium hydrogeniformans sapolanicus [CP002304]
1453866
1453941
+
Glu
TTC
[Ensembl]
¡û
>C11110027
CP002304
Bacillota
Halanaerobium hydrogeniformans sapolanicus [CP002304]
2332376
2332451
+
Glu
TTC
[Ensembl]
¡û
>C11110035
CP002304
Bacillota
Halanaerobium hydrogeniformans sapolanicus [CP002304]
2188650
2188575
-
Glu
TTC
[Ensembl]
¡û
>C11110594
CP002175
Bacillota
Halanaerobium praevalens DSM 2228 [CP002175]
1910543
1910468
-
Glu
TTC
[Ensembl]
¡û
>C11110603
CP002175
Bacillota
Halanaerobium praevalens DSM 2228 [CP002175]
1104273
1104198
-
Glu
TTC
[Ensembl]
¡û
>C11110606
CP002175
Bacillota
Halanaerobium praevalens DSM 2228 [CP002175]
316846
316771
-
Glu
TTC
[Ensembl]
¡û
>W1610905895
LSBN01000005
Bacillota
Halanaerobium sp. T82-1 [LSBN]
62845
62770
-
Glu
TTC
[ENA]
¡û
>W1710511569
FMYT01000013
Bacillota
Halanaerobium congolense [FMYT]
22478
22403
-
Glu
TTC
[ENA]
¡û
>W1710511586
FMYT01000029
Bacillota
Halanaerobium congolense [FMYT]
958
1033
+
Glu
TTC
[ENA]
¡û
>W1710514971
FNBJ01000001
Bacillota
Halanaerobium congolense [FNBJ]
214238
214163
-
Glu
TTC
[ENA]
¡û
>W1710514991
FNBJ01000003
Bacillota
Halanaerobium congolense [FNBJ]
32596
32521
-
Glu
TTC
[ENA]
¡û
>W1710517292
FNDF01000001
Bacillota
Halanaerobium congolense [FNDF]
195675
195600
-
Glu
TTC
[ENA]
¡û
>W1710517332
FNDF01000047
Bacillota
Halanaerobium congolense [FNDF]
954
1029
+
Glu
TTC
[ENA]
¡û
>W1710521020
FNGB01000002
Bacillota
Halanaerobium congolense [FNGB]
116495
116420
-
Glu
TTC
[ENA]
¡û
>W1710521045
FNGB01000035
Bacillota
Halanaerobium congolense [FNGB]
806
881
+
Glu
TTC
[ENA]
¡û
>W1710522713
FNHK01000003
Bacillota
Halanaerobium congolense [FNHK]
116548
116473
-
Glu
TTC
[ENA]
¡û
>W1710522737
FNHK01000039
Bacillota
Halanaerobium congolense [FNHK]
972
1047
+
Glu
TTC
[ENA]
¡û
>W1710553011
FOHG01000001
Bacillota
Halanaerobium congolense [FOHG]
64867
64942
+
Glu
TTC
[ENA]
¡û
>W1710553044
FOHG01000003
Bacillota
Halanaerobium congolense [FOHG]
32362
32287
-
Glu
TTC
[ENA]
¡û
>W1710553299
FOHM01000006
Bacillota
Halanaerobium congolense [FOHM]
59866
59941
+
Glu
TTC
[ENA]
¡û
>W1710553328
FOHM01000036
Bacillota
Halanaerobium congolense [FOHM]
20309
20234
-
Glu
TTC
[ENA]
¡û
>W1710568132
FOTI01000008
Bacillota
Halanaerobium salsuginis [FOTI]
65391
65316
-
Glu
TTC
[ENA]
¡û
>W1710568150
FOTI01000033
Bacillota
Halanaerobium salsuginis [FOTI]
32062
31987
-
Glu
TTC
[ENA]
¡û
>W1710572798
FOWY01000001
Bacillota
Halanaerobium congolense [FOWY]
214216
214141
-
Glu
TTC
[ENA]
¡û
>W1710572818
FOWY01000004
Bacillota
Halanaerobium congolense [FOWY]
32609
32534
-
Glu
TTC
[ENA]
¡û
>W1710592894
FRCV01000001
Bacillota
Halanaerobium congolense [FRCV]
57020
57095
+
Glu
TTC
[ENA]
¡û
>W1710592937
FRCV01000028
Bacillota
Halanaerobium congolense [FRCV]
970
1045
+
Glu
TTC
[ENA]
¡û
>W1710597293
FTNC01000036
Bacillota
Halanaerobium kushneri [FTNC]
18867
18792
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK