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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283811 (45 seq.)
>W1711294281
LZZG01000151
Bacillota
Clostridium beijerinckii [LZZG]
412
487
+
Ala
TGC
[ENA]
¡û
>W1711294283
LZZG01000162
Bacillota
Clostridium beijerinckii [LZZG]
411
486
+
Ala
TGC
[ENA]
¡û
>W1711294490
LZZK01000186
Bacillota
Clostridium beijerinckii [LZZK]
752
677
-
Ala
TGC
[ENA]
¡û
>W1711294492
LZZK01000190
Bacillota
Clostridium beijerinckii [LZZK]
705
630
-
Ala
TGC
[ENA]
¡û
>W1711294544
LZZM01000068
Bacillota
Clostridium puniceum [LZZM]
444
519
+
Ala
TGC
[ENA]
¡û
>W1711294546
LZZM01000098
Bacillota
Clostridium puniceum [LZZM]
483
558
+
Ala
TGC
[ENA]
¡û
>W1711294552
LZZM01000172
Bacillota
Clostridium puniceum [LZZM]
209
284
+
Ala
TGC
[ENA]
¡û
>C171045812
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
145014
145089
+
Ala
TGC
-
¡û
>C171045843
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
846530
846605
+
Ala
TGC
-
¡û
>W131156853
AQQG01000032
Bacillota
Clostridium diolis DSM 15410 [AQQG]
338
263
-
Ala
TGC
[ENA]
¡û
>W131156856
AQQG01000051
Bacillota
Clostridium diolis DSM 15410 [AQQG]
83
158
+
Ala
TGC
[ENA]
¡û
>w011522
AALO01000068
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
2259
2182
-
Ala
TGC
[ENA]
¡û
>w011512
AALO01000056
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
2399
2322
-
Ala
TGC
[ENA]
¡û
>WENV180197941
OBAB01039345
[OBAB] human gut metagenome; faeces
300
373
+
Ala
TGC
[ENA]
¢þ
>WENV180232685
OBCO01008607
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
107
182
+
Ala
TGC
[ENA]
¢þ
>WENV180233638
OBCP01004757
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
79
4
-
Ala
TGC
[ENA]
¢þ
>WENV180310810
OBJT01028727
[OBJT] soil metagenome; soil
811
736
-
Ala
TGC
[ENA]
¢þ
>WENV180571972
OCLT01001188
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
79
4
-
Ala
TGC
[ENA]
¢þ
>WENV180640285
OCRL01001164
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
79
4
-
Ala
TGC
[ENA]
¢þ
>WENV170784987
MDSO01145978
[MDSO] gut metagenome; Stomach gut content
214
287
+
Ala
TGC
[ENA]
¢þ
>WENV170785023
MDSO01196701
[MDSO] gut metagenome; Stomach gut content
501
428
-
Ala
TGC
[ENA]
¢þ
>WENV170785161
MDSP01000741
[MDSP] gut metagenome; Stomach gut content
4658
4732
+
Ala
TGC
[ENA]
¢þ
>WENV170785283
MDSP01007371
[MDSP] gut metagenome; Stomach gut content
2220
2294
+
Ala
TGC
[ENA]
¢þ
>WENV170785323
MDSP01016942
[MDSP] gut metagenome; Stomach gut content
1767
1841
+
Ala
TGC
[ENA]
¢þ
>WENV170785385
MDSP01031379
[MDSP] gut metagenome; Stomach gut content
42
116
+
Ala
TGC
[ENA]
¢þ
>WENV170785414
MDSP01040668
[MDSP] gut metagenome; Stomach gut content
523
449
-
Ala
TGC
[ENA]
¢þ
>WENV170785773
MDSP01367365
[MDSP] gut metagenome; Stomach gut content
386
460
+
Ala
TGC
[ENA]
¢þ
>WENV170786000
MDSQ01103945
[MDSQ] gut metagenome; Hindgut content
1415
1489
+
Ala
TGC
[ENA]
¢þ
>C181176697
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1002083
1002158
+
Ala
TGC
-
¡û
>C181176717
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1144817
1144892
+
Ala
TGC
-
¡û
>C181176777
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
782186
782111
-
Ala
TGC
-
¡û
>C181203616
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
143817
143892
+
Ala
TGC
-
¡û
>C181203653
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
961990
962065
+
Ala
TGC
-
¡û
>W1910227420
FNLJ01000013
Bacillota
Traorella massiliensis Marseille-P3110 [FNLJ]
241949
241874
-
Ala
TGC
[ENA]
¡û
>C151088330
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
6042638
6042563
-
Ala
TGC
-
¡û
>C151088367
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
5343470
5343395
-
Ala
TGC
-
¡û
>C11105507
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
12176
12249
+
Ala
TGC
[Ensembl]
¡û
>C11105515
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
78567
78640
+
Ala
TGC
[Ensembl]
¡û
>C11105517
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
86124
86197
+
Ala
TGC
[Ensembl]
¡û
>C11105541
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
573714
573787
+
Ala
TGC
[Ensembl]
¡û
>C11105550
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
1231043
1231116
+
Ala
TGC
[Ensembl]
¡û
>C11105584
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3623902
3623829
-
Ala
TGC
[Ensembl]
¡û
>W11176273
AFWX01000001
Bacillota
Clostridium sp. DL-VIII [AFWX]
404034
404109
+
Ala
TGC
[ENA]
¡û
>C131012890
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
11089
11164
+
Ala
TGC
[Ensembl]
¡û
>C131012906
CP004121
Bacillota
Clostridium saccharoperbutylacetonicum N1-4[HMT] [CP004121]
150822
150897
+
Ala
TGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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