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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283820 (117 seq.)
>W1710821357
LKST01000004
Actinomycetota
Corynebacterium oculi [LKST]
7431
7356
-
Lys
TTT
[ENA]
¡û
>W1711066610
LSCZ01000025
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
263531
263606
+
Lys
TTT
[ENA]
¡û
>W1711080516
LSRB01000005
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
38278
38353
+
Lys
TTT
[ENA]
¡û
>W1711084318
LSVQ01000008
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSVQ]
12380
12305
-
Lys
TTT
[ENA]
¡û
>W1711085173
LSWG01000067
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSWG]
12310
12235
-
Lys
TTT
[ENA]
¡û
>W1711085459
LSWM01000006
Actinomycetota
Corynebacterium diphtheriae bv. gravis [LSWM]
13660
13585
-
Lys
TTT
[ENA]
¡û
>W1711085865
LSWU01000032
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSWU]
125744
125819
+
Lys
TTT
[ENA]
¡û
>W1711086067
LSWY01000031
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSWY]
1674
1599
-
Lys
TTT
[ENA]
¡û
>W1711086464
LSXG01000049
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSXG]
8893
8818
-
Lys
TTT
[ENA]
¡û
>W1711087456
LSYA01000011
Actinomycetota
Corynebacterium diphtheriae bv. gravis [LSYA]
13063
12988
-
Lys
TTT
[ENA]
¡û
>W1711087589
LSYC01000045
Actinomycetota
Corynebacterium diphtheriae bv. mitis [LSYC]
12457
12382
-
Lys
TTT
[ENA]
¡û
>W1711090450
LTAS01000007
Actinomycetota
Corynebacterium diphtheriae bv. intermedius [LTAS]
180
105
-
Lys
TTT
[ENA]
¡û
>W1711096394
LTHS01000028
Actinomycetota
Corynebacterium sp. HMSC077B05 [LTHS]
12627
12552
-
Lys
TTT
[ENA]
¡û
>W1711099116
LTKF01000004
Actinomycetota
Corynebacterium sp. HMSC072G08 [LTKF]
12636
12561
-
Lys
TTT
[ENA]
¡û
>W1711108489
LTTU01000036
Actinomycetota
Corynebacterium sp. HMSC065A05 [LTTU]
27959
28034
+
Lys
TTT
[ENA]
¡û
>W1711109369
LTUP01000046
Actinomycetota
Corynebacterium sp. HMSC077D10 [LTUP]
7775
7700
-
Lys
TTT
[ENA]
¡û
>W1711186610
LWOJ01000001
Actinomycetota
Corynebacterium sp. HMSC05D08 [LWOJ]
52725
52800
+
Lys
TTT
[ENA]
¡û
>W1711187050
LWOT01000018
Actinomycetota
Corynebacterium sp. HMSC28B08 [LWOT]
5125
5198
+
Lys
TTT
[ENA]
¡û
>W1711377231
MDYU01000005
Actinomycetota
Corynebacterium diphtheriae [MDYU]
47915
47990
+
Lys
TTT
[ENA]
¡û
>W1711435458
MINZ01000022
Actinomycetota
Corynebacterium diphtheriae [MINZ]
155
80
-
Lys
TTT
[ENA]
¡û
>W1711435646
MIOD01000006
Actinomycetota
Corynebacterium diphtheriae [MIOD]
209
134
-
Lys
TTT
[ENA]
¡û
>W1711435718
MIOE01000015
Actinomycetota
Corynebacterium diphtheriae [MIOE]
13042
12967
-
Lys
TTT
[ENA]
¡û
>W1711435750
MIOF01000004
Actinomycetota
Corynebacterium diphtheriae [MIOF]
24651
24726
+
Lys
TTT
[ENA]
¡û
>W1711435823
MIOG01000022
Actinomycetota
Corynebacterium diphtheriae [MIOG]
167
92
-
Lys
TTT
[ENA]
¡û
>W1711435892
MIOH01000025
Actinomycetota
Corynebacterium diphtheriae [MIOH]
23828
23903
+
Lys
TTT
[ENA]
¡û
>W1711435916
MIOI01000012
Actinomycetota
Corynebacterium diphtheriae [MIOI]
275
200
-
Lys
TTT
[ENA]
¡û
>W1711436037
MIOK01000035
Actinomycetota
Corynebacterium diphtheriae [MIOK]
285
210
-
Lys
TTT
[ENA]
¡û
>W1711436080
MIOL01000028
Actinomycetota
Corynebacterium diphtheriae [MIOL]
23580
23655
+
Lys
TTT
[ENA]
¡û
>W1711436137
MIOM01000033
Actinomycetota
Corynebacterium diphtheriae [MIOM]
21438
21513
+
Lys
TTT
[ENA]
¡û
>W1711436162
MION01000002
Actinomycetota
Corynebacterium diphtheriae [MION]
13010
12935
-
Lys
TTT
[ENA]
¡û
>W1711436255
MIOO01000037
Actinomycetota
Corynebacterium diphtheriae [MIOO]
14455
14530
+
Lys
TTT
[ENA]
¡û
>W1711436340
MIOQ01000085
Actinomycetota
Corynebacterium diphtheriae [MIOQ]
27521
27596
+
Lys
TTT
[ENA]
¡û
>W1711436470
MIOS01000029
Actinomycetota
Corynebacterium ulcerans [MIOS]
7795
7722
-
Lys
TTT
[ENA]
¡û
>W1711453699
MIYN01000021
Actinomycetota
Corynebacterium diphtheriae [MIYN]
167
92
-
Lys
TTT
[ENA]
¡û
>W1711453755
MIYO01000014
Actinomycetota
Corynebacterium diphtheriae [MIYO]
71368
71443
+
Lys
TTT
[ENA]
¡û
>W1711453812
MIYP01000052
Actinomycetota
Corynebacterium diphtheriae [MIYP]
165
90
-
Lys
TTT
[ENA]
¡û
>W1711453849
MIYQ01000014
Actinomycetota
Corynebacterium diphtheriae [MIYQ]
166
91
-
Lys
TTT
[ENA]
¡û
>W1711482542
MKAX01000232
Actinomycetota
Corynebacterium sp. BCW_4722 concisus [MKAX]
2501
2426
-
Lys
TTT
[ENA]
¡û
>W1711508122
MKYG01000007
Actinomycetota
Corynebacterium diphtheriae [MKYG]
119734
119809
+
Lys
TTT
[ENA]
¡û
>W1711508166
MKYH01000006
Actinomycetota
Corynebacterium diphtheriae [MKYH]
119571
119646
+
Lys
TTT
[ENA]
¡û
>W1711508289
MKYJ01000013
Actinomycetota
Corynebacterium diphtheriae [MKYJ]
13732
13657
-
Lys
TTT
[ENA]
¡û
>W1711508380
MKYL01000008
Actinomycetota
Corynebacterium diphtheriae [MKYL]
119571
119646
+
Lys
TTT
[ENA]
¡û
>W1711510702
MLBH01000017
Actinomycetota
Corynebacterium diphtheriae [MLBH]
14476
14551
+
Lys
TTT
[ENA]
¡û
>W1711510801
MLBJ01000016
Actinomycetota
Corynebacterium diphtheriae [MLBJ]
47382
47457
+
Lys
TTT
[ENA]
¡û
>W1711510969
MLBM01000018
Actinomycetota
Corynebacterium diphtheriae [MLBM]
14476
14551
+
Lys
TTT
[ENA]
¡û
>W1711687004
MSBR01000014
Actinomycetota
Corynebacterium diphtheriae [MSBR]
54092
54167
+
Lys
TTT
[ENA]
¡û
>W1711687005
MSBR01000014
Actinomycetota
Corynebacterium diphtheriae [MSBR]
4053
3978
-
Lys
TTT
[ENA]
¡û
>W1711687026
MSBS01000018
Actinomycetota
Corynebacterium diphtheriae [MSBS]
6885
6812
-
Lys
TTT
[ENA]
¡û
>W1711687122
MSBU01000005
Actinomycetota
Corynebacterium diphtheriae [MSBU]
121207
121282
+
Lys
TTT
[ENA]
¡û
>W1711694820
MSIH01000021
Actinomycetota
Corynebacterium diphtheriae [MSIH]
8998
8923
-
Lys
TTT
[ENA]
¡û
>W1711695005
MSIL01000005
Actinomycetota
Corynebacterium diphtheriae [MSIL]
125786
125861
+
Lys
TTT
[ENA]
¡û
>W1711695075
MSIM01000014
Actinomycetota
Corynebacterium diphtheriae [MSIM]
42598
42673
+
Lys
TTT
[ENA]
¡û
>W1711695191
MSIO01000019
Actinomycetota
Corynebacterium diphtheriae [MSIO]
10916
10991
+
Lys
TTT
[ENA]
¡û
>W1711708681
MSTU01000009
Actinomycetota
Corynebacterium diphtheriae [MSTU]
124107
124182
+
Lys
TTT
[ENA]
¡û
>W1711946322
NBNK01000007
Actinomycetota
Corynebacterium diphtheriae [NBNK]
8937
8862
-
Lys
TTT
[ENA]
¡û
>W1711980041
NDHN01000007
Actinomycetota
Corynebacterium diphtheriae [NDHN]
8937
8862
-
Lys
TTT
[ENA]
¡û
>W1711980325
NDHS01000015
Actinomycetota
Corynebacterium diphtheriae [NDHS]
13434
13359
-
Lys
TTT
[ENA]
¡û
>C171002076
CP009249
Actinomycetota
Corynebacterium phocae M408/89/1 [CP009249]
580831
580906
+
Lys
TTT
-
¡û
>C171077626
CP018331
Actinomycetota
Corynebacterium diphtheriae B-D-16-78 [CP018331]
1126478
1126403
-
Lys
TTT
-
¡û
>C171118667
CP021417
Actinomycetota
Corynebacterium silvaticum PO100/5 [CP021417]
2056392
2056319
-
Lys
TTT
-
¡û
>W131159193
AQUV01000004
Actinomycetota
Corynebacterium capitovis DSM 44611 [AQUV]
5708
5635
-
Lys
TTT
[ENA]
¡û
>W131159289
AQUX01000011
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
64400
64475
+
Lys
TTT
[ENA]
¡û
>W141092056
AUZO01000020
Actinomycetota
Corynebacterium diphtheriae str. Aberdeen [AUZO]
12746
12671
-
Lys
TTT
[ENA]
¡û
>W141195726
AYUJ01000008
Actinomycetota
Corynebacterium ulcerans NCTC 12077 [AYUJ]
8580
8505
-
Lys
TTT
[ENA]
¡û
>W141243576
CAJP01000044
Actinomycetota
Corynebacterium timonense 5401744 [CAJP]
6262
6187
-
Lys
TTT
[ENA]
¡û
>WENV182835374
OKFN01000005
[OKFN] human gut metagenome; human gut
126375
126448
+
Lys
TTT
[ENA]
¢þ
>C181211002
LS483400
Actinomycetota
Corynebacterium ulcerans NCTC7908 [LS483400]
64890
64963
+
Lys
TTT
-
¡û
>C181211163
LS483402
Actinomycetota
Corynebacterium ulcerans NCTC13718 [LS483402]
58384
58311
-
Lys
TTT
-
¡û
>C181211981
LS483416
Actinomycetota
Corynebacterium ulcerans NCTC8639 [LS483416]
2150489
2150562
+
Lys
TTT
-
¡û
>C181224641
LT906443
Actinomycetota
Corynebacterium ulcerans NCTC7910 [LT906443]
980163
980090
-
Lys
TTT
-
¡û
>C191114590
CP033897
Actinomycetota
Corynebacterium gerontici W8 [CP033897]
441302
441375
+
Lys
TTT
-
¡û
>C191114640
CP033898
Actinomycetota
Corynebacterium pseudopelargi 812CH [CP033898]
437579
437652
+
Lys
TTT
-
¡û
>C191138545
CP035299
Actinomycetota
Corynebacterium pelargi 136/3 [CP035299]
467419
467492
+
Lys
TTT
-
¡û
>C191160716
CP038504
Actinomycetota
Corynebacterium diphtheriae TH1526 [CP038504]
1763960
1763887
-
Lys
TTT
-
¡û
>C191161683
CP038789
Actinomycetota
Corynebacterium diphtheriae subsp. lausannense CMCNS703 [CP038789]
1465086
1465159
+
Lys
TTT
-
¡û
>C191209700
LR134381
Actinomycetota
Corynebacterium kutscheri NCTC11138 [LR134381]
17608
17681
+
Lys
TTT
-
¡û
>C191210916
LR134407
Actinomycetota
Corynebacterium kutscheri NCTC3655 [LR134407]
1168457
1168384
-
Lys
TTT
-
¡û
>W09122464
ACGE01000166
Actinomycetota
Corynebacterium striatum ATCC 6940 [ACGE]
48110
48185
+
Lys
TTT
[ENA]
¡û
>W09124028
ACHJ01000022
Actinomycetota
Corynebacterium lipophiloflavum DSM 44291 [ACHJ]
56426
56499
+
Lys
TTT
[ENA]
¡û
>W09127877
ACLI01000021
Actinomycetota
Corynebacterium efficiens YS-314 [ACLI]
78574
78649
+
Lys
TTT
[ENA]
¡û
>W1910180431
BJLD01000001
Actinomycetota
Corynebacterium striatum NBRC 15291 [BJLD]
21533
21460
-
Lys
TTT
[ENA]
¡û
>W1910339918
FTLL01000025
Actinomycetota
Corynebacterium urinipleomorphum Marseille-P2799 [FTLL]
66967
67040
+
Lys
TTT
[ENA]
¡û
>W1910374202
FUIB01000037
Actinomycetota
Corynebacterium glutamicum B Co 03.31 [FUIB]
7719
7646
-
Lys
TTT
[ENA]
¡û
>W1910640429
LSWN01000020
Actinomycetota
Corynebacterium ulcerans 4940 [LSWN]
115240
115313
+
Lys
TTT
[ENA]
¡û
>W1910640586
LTBE01000016
Actinomycetota
Corynebacterium striatum 2023 [LTBE]
7267
7194
-
Lys
TTT
[ENA]
¡û
>W1910640654
LTBF01000025
Actinomycetota
Corynebacterium striatum 2230 [LTBF]
13741
13668
-
Lys
TTT
[ENA]
¡û
>W1910640689
LTBG01000008
Actinomycetota
Corynebacterium striatum 2245 [LTBG]
7938
7865
-
Lys
TTT
[ENA]
¡û
>W1910784399
MPSS01000005
Actinomycetota
Corynebacterium ulcerans 2590 [MPSS]
8073
8000
-
Lys
TTT
[ENA]
¡û
>W1911204367
NRIL01000016
Actinomycetota
Corynebacterium striatum 2130 [NRIL]
237660
237733
+
Lys
TTT
[ENA]
¡û
>W1911204467
NRIN01000006
Actinomycetota
Corynebacterium striatum 2296 [NRIN]
204768
204841
+
Lys
TTT
[ENA]
¡û
>W1911204594
NRIP01000006
Actinomycetota
Corynebacterium striatum 2425 [NRIP]
211015
211088
+
Lys
TTT
[ENA]
¡û
>W1911490462
OANN01000082
Actinomycetota
Corynebacterium belfantii diphtheriae [OANN]
27988
28061
+
Lys
TTT
[ENA]
¡û
>C151012243
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
2245753
2245678
-
Lys
TTT
[Ensembl]
¡û
>C151053120
CP009500
Actinomycetota
Corynebacterium ulcerans 210932 [CP009500]
1984222
1984149
-
Lys
TTT
[Ensembl]
¡û
>C151056057
CP009622
Actinomycetota
Corynebacterium ramonii FRC0011 [CP009622]
1950700
1950625
-
Lys
TTT
[Ensembl]
¡û
>C151058129
CP009716
Actinomycetota
Corynebacterium ulcerans 05146 [CP009716]
1958536
1958463
-
Lys
TTT
[Ensembl]
¡û
>C151079752
CP011312
Actinomycetota
Corynebacterium kutscheri DSM 20755 [CP011312]
607520
607595
+
Lys
TTT
[Ensembl]
¡û
>C151084351
CP011541
Actinomycetota
Corynebacterium epidermidicanis DSM 45586 [CP011541]
2173311
2173238
-
Lys
TTT
[Ensembl]
¡û
>W10113761
ADGN01000008
Actinomycetota
Corynebacterium resistens DSM 45100 [ADGN]
601
528
-
Lys
TTT
[ENA]
¡û
>C11106578
CP002790
Actinomycetota
Corynebacterium ulcerans 809 [CP002790]
2000623
2000550
-
Lys
TTT
[Ensembl]
¡û
>C11106630
CP002791
Actinomycetota
Corynebacterium ulcerans BR-AD22 [CP002791]
2060460
2060387
-
Lys
TTT
[Ensembl]
¡û
>W1510769856
JAQQ01000020
Actinomycetota
Corynebacterium diphtheriae bv. gravis str. ISS 4749 [JAQQ]
12748
12673
-
Lys
TTT
[ENA]
¡û
>W11117097
ADGN01000008
Actinomycetota
Corynebacterium resistens DSM 45100 [ADGN]
601
528
-
Lys
TTT
[ENA]
¡û
>W1511357115
JRVJ01000010
Actinomycetota
Corynebacterium auriscanis CIP 106629 [JRVJ]
61890
61817
-
Lys
TTT
[ENA]
¡û
>W1511438090
JULV01000149
Actinomycetota
Corynebacterium striatum 963_CAUR [JULV]
1491
1416
-
Lys
TTT
[ENA]
¡û
>W1511438126
JULW01000119
Actinomycetota
Corynebacterium striatum 962_CAUR [JULW]
49514
49589
+
Lys
TTT
[ENA]
¡û
>W1511449438
JVBA01000043
Actinomycetota
Corynebacterium striatum 587_CAUR [JVBA]
1475
1400
-
Lys
TTT
[ENA]
¡û
>W1511467819
JVTL01000013
Actinomycetota
Corynebacterium striatum 1329_CAUR [JVTL]
226007
226082
+
Lys
TTT
[ENA]
¡û
>W1511467903
JVTN01000021
Actinomycetota
Corynebacterium striatum 1327_CAUR [JVTN]
246018
246093
+
Lys
TTT
[ENA]
¡û
>W1511552784
JZUS01000005
Actinomycetota
Corynebacterium ulcerans LSPQ-04227 [JZUS]
8077
8002
-
Lys
TTT
[ENA]
¡û
>C121000907
AP012284
Actinomycetota
Corynebacterium ulcerans 0102 [AP012284]
2080528
2080455
-
Lys
TTT
[Ensembl]
¡û
>C161063666
CP013991
Actinomycetota
Corynebacterium glutamicum USDA-ARS-USMARC-56828 [CP013991]
2677051
2676978
-
Lys
TTT
[Ensembl]
¡û
>C161089887
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
2485764
2485689
-
Lys
TTT
[Ensembl]
¡û
>W121068926
AJVH01000021
Actinomycetota
Corynebacterium diphtheriae bv. intermedius str. NCTC 5011 [AJVH]
160
85
-
Lys
TTT
[ENA]
¡û
>W1610685319
LKST01000004
Actinomycetota
Corynebacterium oculi [LKST]
7431
7356
-
Lys
TTT
[ENA]
¡û
>W1610907180
LSCZ01000025
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
263531
263606
+
Lys
TTT
[ENA]
¡û
>W1610919383
LSRB01000005
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
38278
38353
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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