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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283840 (10 seq.)
>WENV180704811
ODEJ01000073
[ODEJ] human metagenome; G_DNA_Tongue dorsum
8732
8805
+
Thr
TGT
[ENA]
¡û
>WENV180768523
ODIG01008947
[ODIG] human metagenome; G_DNA_Tongue dorsum
2317
2390
+
Thr
TGT
[ENA]
¡û
>WENV180778962
ODIN01000053
[ODIN] human metagenome; G_DNA_Throat
64324
64251
-
Thr
TGT
[ENA]
¡û
>WENV180782684
ODIQ01000108
[ODIQ] human metagenome; G_DNA_Tongue dorsum
64324
64251
-
Thr
TGT
[ENA]
¡û
>WENV180947756
ODUG01000029
[ODUG] human metagenome; G_DNA_Tongue dorsum
5752
5825
+
Thr
TGT
[ENA]
¡û
>WENV180987912
ODVL01000007
[ODVL] human metagenome; G_DNA_Tongue dorsum
35747
35820
+
Thr
TGT
[ENA]
¡û
>WENV181014354
ODWN01035033
[ODWN] human metagenome; G_DNA_Tongue dorsum
71
144
+
Thr
TGT
[ENA]
¡û
>WENV181015944
ODWR01000031
[ODWR] human metagenome; G_DNA_Tongue dorsum
85923
85850
-
Thr
TGT
[ENA]
¡û
>WENV181038809
ODXQ01004934
[ODXQ] human metagenome; G_DNA_Tongue dorsum
3045
3118
+
Thr
TGT
[ENA]
¡û
>W2011551798
SDRS01000027
Unclassified
TM7 phylum sp. oral taxon 352 TM7_HOT_352-SAG1 [SDRS]
5963
6036
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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