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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283922 (68 seq.)
>W1711043876
LRMP01000003
Actinomycetota
Brachybacterium sp. sponge [LRMP]
2176
2249
+
Thr
GGT
[ENA]
¡û
>W1711185728
LWNQ01000008
Actinomycetota
Dermabacter sp. HMSC08H10 [LWNQ]
8460
8533
+
Thr
GGT
[ENA]
¡û
>W1711186236
LWOB01000070
Actinomycetota
Brachybacterium sp. HMSC06H03 [LWOB]
9859
9932
+
Thr
GGT
[ENA]
¡û
>W1711186318
LWOD01000004
Actinomycetota
Dermabacter sp. HMSC06F07 [LWOD]
10265
10192
-
Thr
GGT
[ENA]
¡û
>W1711621772
MPDM01000005
Actinomycetota
Boudabousia marimammalium [MPDM]
185323
185396
+
Thr
GGT
[ENA]
¡û
>C171060478
CP017297
Actinomycetota
Brachybacterium sp. P6-10-X1 [CP017297]
1522672
1522599
-
Thr
GGT
-
¡û
>W131098124
AORC01000015
Actinomycetota
Brachybacterium muris UCD-AY4 [AORC]
93670
93597
-
Thr
GGT
[ENA]
¡û
>W131206293
ATFO01000008
Actinomycetota
Dermabacter sp. HFH0086 [ATFO]
721053
720980
-
Thr
GGT
[ENA]
¡û
>WENV180312713
OBJZ01000057
[OBJZ] human gut metagenome; fecal sample
8496
8569
+
Thr
GGT
[ENA]
¢þ
>WENV180554426
OCJN01000832
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
2557
2630
+
Thr
GGT
[ENA]
¢þ
>WENV182412923
OIFX01000002
[OIFX] human gut metagenome; stool
377347
377274
-
Thr
GGT
[ENA]
¢þ
>WENV182812782
OJXV01000011
[OJXV] human gut metagenome; human gut
8255
8328
+
Thr
GGT
[ENA]
¢þ
>WENV182819752
OKAF01006140
[OKAF] human gut metagenome; human gut
248
175
-
Thr
GGT
[ENA]
¢þ
>WENV182825506
OKCK01000162
[OKCK] human gut metagenome; human gut
8287
8360
+
Thr
GGT
[ENA]
¢þ
>WENV182831702
OKEG01000203
[OKEG] human gut metagenome; human gut
10243
10170
-
Thr
GGT
[ENA]
¢þ
>WENV182839084
OKGZ01003903
[OKGZ] human gut metagenome; human gut
151
78
-
Thr
GGT
[ENA]
¢þ
>WENV182842521
OKIF01000005
[OKIF] human gut metagenome; human gut
101548
101475
-
Thr
GGT
[ENA]
¢þ
>WENV182845647
OKJE01000302
[OKJE] human gut metagenome; human gut
4232
4159
-
Thr
GGT
[ENA]
¢þ
>WENV182849742
OKKT01002442
[OKKT] human gut metagenome; human gut
251
178
-
Thr
GGT
[ENA]
¢þ
>WENV182855193
OKMY01000254
[OKMY] human gut metagenome; human gut
6657
6584
-
Thr
GGT
[ENA]
¢þ
>WENV183087974
OLJQ01001377
[OLJQ] human gut metagenome; human gut
1212
1285
+
Thr
GGT
[ENA]
¢þ
>WENV183511506
OMJG01000518
[OMJG] food metagenome; Cotija cheese
2087
2014
-
Thr
GGT
[ENA]
¢þ
>W141400438
JDRS01000006
Actinomycetota
Dermabacter hominis 1368 [JDRS]
164239
164166
-
Thr
GGT
[ENA]
¡û
>W141406679
JDYK01000011
Actinomycetota
Brachybacterium phenoliresistens [JDYK]
11700
11773
+
Thr
GGT
[ENA]
¡û
>C181062036
CP022316
Actinomycetota
Brachybacterium avium VR2415 [CP022316]
676536
676463
-
Thr
GGT
-
¡û
>C181084614
CP023563
Actinomycetota
Brachybacterium vulturis VM2412 [CP023563]
1835432
1835505
+
Thr
GGT
-
¡û
>C181084661
CP023564
Actinomycetota
Brachybacterium ginsengisoli DCY80 [CP023564]
1347810
1347883
+
Thr
GGT
-
¡û
>W09108403
ABTF01000010
Actinomycetota
Brachybacterium faecium DSM 4810 [ABTF]
6421
6348
-
Thr
GGT
[ENA]
¡û
>C181199720
CP031356
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [CP031356]
1795919
1795846
-
Thr
GGT
-
¡û
>C191051308
CP027295
Actinomycetota
Brachybacterium sp. SGAir0954 [CP027295]
1812516
1812589
+
Thr
GGT
-
¡û
>W1910237243
FPKP01000003
Actinomycetota
Actinomyces urinae FC2 Marseille-P2225 [FPKP]
863299
863226
-
Thr
GGT
[ENA]
¡û
>W1910321377
FSEE01000020
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 417 [FSEE]
149967
149894
-
Thr
GGT
[ENA]
¡û
>W1910331238
FSLI01000047
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1079 [FSLI]
26921
26848
-
Thr
GGT
[ENA]
¡û
>W1910442472
FWFG01000110
Actinomycetota
Brachybacterium nesterenkovii CIP104813 [FWFG]
23552
23479
-
Thr
GGT
[ENA]
¡û
>W1910442500
FWFH01000098
Actinomycetota
Brachybacterium faecium FM_RA_Lac3 [FWFH]
27949
27876
-
Thr
GGT
[ENA]
¡û
>W1910442575
FWFI01000020
Actinomycetota
Corynebacterium xerosis B Mi 98.15 [FWFI]
73947
73874
-
Thr
GGT
[ENA]
¡û
>W1910498711
FXXB01000004
Actinomycetota
Brachybacterium massiliense mt5 [FXXB]
33697
33770
+
Thr
GGT
[ENA]
¡û
>W1911203284
NRGR01000016
Actinomycetota
Brachybacterium alimentarium 341_9 [NRGR]
22544
22617
+
Thr
GGT
[ENA]
¡û
>W1911203312
NRGS01000003
Actinomycetota
Brachybacterium alimentarium 908_11 [NRGS]
22544
22617
+
Thr
GGT
[ENA]
¡û
>W1911532915
OIWY01000006
Actinomycetota
Brachybacterium timonense Marseille-P4339 [OIWY]
922397
922324
-
Thr
GGT
[ENA]
¡û
>W1911596796
PNHL01000002
Actinomycetota
Brachybacterium sp. UMB0905 [PNHL]
2099
2172
+
Thr
GGT
[ENA]
¡û
>W1911702238
QOCI01000010
Actinomycetota
Brachybacterium paraconglomeratum KCTC 9916 [QOCI]
154167
154094
-
Thr
GGT
[ENA]
¡û
>W1911726674
QSWH01000010
Actinomycetota
Brachybacterium saurashtrense DSM 23186 [QSWH]
22590
22663
+
Thr
GGT
[ENA]
¡û
>W1911765366
QXCP01000008
Actinomycetota
Brachybacterium sp. EE-P12 [QXCP]
83044
82971
-
Thr
GGT
[ENA]
¡û
>W1810187287
PKHM01000001
Actinomycetota
Dermabacter hominis UMB0490 [PKHM]
8653
8726
+
Thr
GGT
[ENA]
¡û
>W1810196888
PNFB01000015
Actinomycetota
Brachybacterium sp. YJGR34 [PNFB]
93840
93767
-
Thr
GGT
[ENA]
¡û
>W1810587417
QFKX01000008
Actinomycetota
Brachybacterium endophyticum M1HQ-2 [QFKX]
63690
63617
-
Thr
GGT
[ENA]
¡û
>W1810756710
QPGF01000042
Actinomycetota
Brachybacterium alimentarium 738_10 [QPGF]
173847
173774
-
Thr
GGT
[ENA]
¡û
>W1810756750
QPGG01000034
Actinomycetota
Brachybacterium alimentarium 862_8 [QPGG]
173934
173861
-
Thr
GGT
[ENA]
¡û
>W1810756787
QPGH01000024
Actinomycetota
Brachybacterium alimentarium 876_9 [QPGH]
165642
165569
-
Thr
GGT
[ENA]
¡û
>W1810756812
QPGI01000002
Actinomycetota
Brachybacterium alimentarium 900_8 [QPGI]
22564
22637
+
Thr
GGT
[ENA]
¡û
>W1810756862
QPGJ01000002
Actinomycetota
Brachybacterium alimentarium 947_11 [QPGJ]
22505
22578
+
Thr
GGT
[ENA]
¡û
>W1810756940
QPGK01000020
Actinomycetota
Brachybacterium alimentarium 962_10 [QPGK]
123093
123020
-
Thr
GGT
[ENA]
¡û
>W1810757119
QPGN01000005
Actinomycetota
Brachybacterium sp. JB7 [QPGN]
229630
229703
+
Thr
GGT
[ENA]
¡û
>W1510021927
BCAK01000028
Actinomycetota
Brachybacterium sp. SW0106-09 [BCAK]
2087
2160
+
Thr
GGT
[ENA]
¡û
>C10101568
CP001643
Actinomycetota
Brachybacterium faecium DSM 4810 [CP001643]
2400531
2400458
-
Thr
GGT
[Ensembl]
¡û
>C11111552
CP002810
Actinomycetota
Isoptericola variabilis 225 [CP002810]
664458
664531
+
Thr
GGT
[Ensembl]
¡û
>W11177871
AGBX01000008
Actinomycetota
Brachybacterium squillarum M-6-3 [AGBX]
28995
28922
-
Thr
GGT
[ENA]
¡û
>C161039625
CP012117
Actinomycetota
Dermabacter vaginalis AD1-86 [CP012117]
1735663
1735590
-
Thr
GGT
[Ensembl]
¡û
>C161106422
LN849456
Actinomycetota
Devriesea agamarum IMP2 [LN849456]
13979
14052
+
Thr
GGT
-
¡û
>W1610069281
BCSI01000018
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
8423
8496
+
Thr
GGT
[ENA]
¡û
>W1610074050
BCWJ01000009
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BCWJ]
37721
37648
-
Thr
GGT
[ENA]
¡û
>W1610095042
CYUG01000011
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
686774
686701
-
Thr
GGT
[ENA]
¡û
>W121018097
AGSO01000002
Actinomycetota
Brachybacterium paraconglomeratum LC44 [AGSO]
321316
321243
-
Thr
GGT
[ENA]
¡û
>W1610885175
LRMP01000003
Actinomycetota
Brachybacterium sp. sponge [LRMP]
2176
2249
+
Thr
GGT
[ENA]
¡û
>W1710066654
BCSI01000018
Actinomycetota
Dermabacter hominis NBRC 106157 [BCSI]
8423
8496
+
Thr
GGT
[ENA]
¡û
>W1710071168
BCWJ01000009
Actinomycetota
Xylanimicrobium pachnodae JCM 13526 = NBRC 107786 [BCWJ]
37721
37648
-
Thr
GGT
[ENA]
¡û
>W1710097837
CYUG01000011
Actinomycetota
Dermabacter indicis massiliensis [CYUG]
686774
686701
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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