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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.283971 (15 seq.)
>WENV180200558
OBAE01123031
[OBAE] human gut metagenome; human gut
121
196
+
Thr
GGT
[ENA]
¡û
>WENV180699451
ODDM01000804
[ODDM] human metagenome; G_DNA_Stool
15733
15658
-
Thr
GGT
[ENA]
¡û
>WENV180710887
ODFM01017148
[ODFM] human metagenome; G_DNA_Stool
138
213
+
Thr
GGT
[ENA]
¡û
>WENV180838601
ODKG01142621
[ODKG] human metagenome; G_DNA_Stool
219
144
-
Thr
GGT
[ENA]
¡û
>WENV180841224
ODKJ01076465
[ODKJ] human metagenome; G_DNA_Stool
253
328
+
Thr
GGT
[ENA]
¡û
>WENV180936636
ODTU01040249
[ODTU] human metagenome; G_DNA_Stool
413
338
-
Thr
GGT
[ENA]
¡û
>WENV181015665
ODWP01125702
[ODWP] human metagenome; G_DNA_Stool
179
254
+
Thr
GGT
[ENA]
¡û
>WENV181072591
OEAN01007809
[OEAN] human metagenome; G_DNA_Stool
269
344
+
Thr
GGT
[ENA]
¡û
>WENV181118935
OEFH01052666
[OEFH] human metagenome; G_DNA_Stool
623
548
-
Thr
GGT
[ENA]
¡û
>WENV181133200
OEGE01097631
[OEGE] human metagenome; G_DNA_Stool
147
72
-
Thr
GGT
[ENA]
¡û
>WENV181742888
OGQL01001038
[OGQL] human gut metagenome; faeces
4427
4502
+
Thr
GGT
[ENA]
¡û
>WENV183116190
OLNQ01066114
[OLNQ] human gut metagenome; faeces
437
362
-
Thr
GGT
[ENA]
¡û
>WENV183201751
OLPW01119612
[OLPW] human gut metagenome; faeces
109
184
+
Thr
GGT
[ENA]
¡û
>WENV183272755
OLRX01000321
[OLRX] human gut metagenome; faeces
30426
30351
-
Thr
GGT
[ENA]
¡û
>W2110103126
CAJFTT010000056
Bacillota
Candidatus Tabaqchalia intestinavium [CAJFTT]
785
710
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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