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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284043 (7 seq.)
>WENV180216311
OBAQ01056425
[OBAQ] human gut metagenome; human gut
131
56
-
Ala
TGC
[ENA]
¡û
>WENV180828259
ODKA01005119
[ODKA] human metagenome; G_DNA_Stool
677
602
-
Ala
TGC
[ENA]
¡û
>WENV182650982
OJMH01000501
[OJMH] human gut metagenome; feces
50590
50665
+
Ala
TGC
[ENA]
¡û
>WENV182711261
OJPD01015505
[OJPD] human gut metagenome; stool sample
53
128
+
Ala
TGC
[ENA]
¡û
>WENV182766975
OJRU01019256
[OJRU] human gut metagenome; stool sample
650
575
-
Ala
TGC
[ENA]
¡û
>WENV183041742
OLGD01001283
[OLGD] human gut metagenome; faeces
10258
10333
+
Ala
TGC
[ENA]
¡û
>WENV183075592
OLIW01000171
[OLIW] human gut metagenome; feces
50590
50665
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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