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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284093 (80 seq.)
>W1710777573
LJBS01000001
Bacillota
Pediococcus acidilactici [LJBS]
11694
11622
-
Ala
CGC
[ENA]
¡û
>W1710915746
LNUM01000002
Bacillota
Pediococcus acidilactici [LNUM]
8314
8386
+
Ala
CGC
[ENA]
¡û
>W1711005324
LQNM01000026
Bacillota
Pediococcus pentosaceus [LQNM]
2829
2757
-
Ala
CGC
[ENA]
¡û
>W1711005585
LQNQ01000032
Bacillota
Pediococcus acidilactici [LQNQ]
2701
2629
-
Ala
CGC
[ENA]
¡û
>W1711005647
LQNR01000085
Bacillota
Pediococcus acidilactici [LQNR]
2699
2627
-
Ala
CGC
[ENA]
¡û
>W1711025287
LRBW01000041
Bacillota
Pediococcus acidilactici [LRBW]
2699
2627
-
Ala
CGC
[ENA]
¡û
>W1711068952
LSFE01000018
Bacillota
Pediococcus pentosaceus [LSFE]
15174
15102
-
Ala
CGC
[ENA]
¡û
>W1711258379
LYUJ01000001
Bacillota
Pediococcus acidilactici [LYUJ]
222022
221950
-
Ala
CGC
[ENA]
¡û
>W1711352493
MDDF01000194
Bacillota
Pediococcus acidilactici [MDDF]
2698
2626
-
Ala
CGC
[ENA]
¡û
>W1711585769
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
1480581
1480653
+
Ala
CGC
[ENA]
¡û
>C171034300
CP014933
Bacillota
Pediococcus claussenii TMW 2.53 [CP014933]
883726
883652
-
Ala
CGC
-
¡û
>C171034357
CP014936
Bacillota
Pediococcus claussenii TMW 2.54 [CP014936]
883722
883648
-
Ala
CGC
-
¡û
>C171036799
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
1503177
1503105
-
Ala
CGC
-
¡û
>C171083311
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
87264
87192
-
Ala
CGC
-
¡û
>C171119469
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
1664562
1664634
+
Ala
CGC
-
¡û
>C171119618
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
82159
82087
-
Ala
CGC
-
¡û
>C171119674
CP021487
Bacillota
Pediococcus acidilactici SRCM100313 [CP021487]
82158
82086
-
Ala
CGC
-
¡û
>C171120478
CP021529
Bacillota
Pediococcus acidilactici SRCM101189 [CP021529]
82159
82087
-
Ala
CGC
-
¡û
>C171126487
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
1648004
1648076
+
Ala
CGC
-
¡û
>W131146254
AQGT01000017
Bacillota
Pediococcus acidilactici D3 [AQGT]
201576
201504
-
Ala
CGC
[ENA]
¡û
>W131239207
BANK01000026
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
2636
2708
+
Ala
CGC
[ENA]
¡û
>C017457
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
107619
107547
-
Ala
CGC
[Ensembl]
¡û
>WENV180279260
OBHX01024547
[OBHX] metagenome; feces
1787
1859
+
Ala
CGC
[ENA]
¢þ
>WENV180334361
OBLF01009713
[OBLF] metagenome; feces
3248
3320
+
Ala
CGC
[ENA]
¢þ
>WENV180349462
OBLO01046922
[OBLO] metagenome; feces
736
808
+
Ala
CGC
[ENA]
¢þ
>W141241994
CAHU01000018
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
9000
9072
+
Ala
CGC
[ENA]
¡û
>W141280113
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
950510
950582
+
Ala
CGC
[ENA]
¡û
>WENV183762368
PPYE01275579
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
8363
8435
+
Ala
CGC
[ENA]
¢þ
>WENV183769042
PPYE01412609
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1340
1268
-
Ala
CGC
[ENA]
¢þ
>WENV183789052
PPYF01374449
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2047
1975
-
Ala
CGC
[ENA]
¢þ
>WENV183790426
PPYF01411330
[PPYF] human gut metagenome; stool from patient with Crohn's disease
61526
61454
-
Ala
CGC
[ENA]
¢þ
>WENV183792288
PPYF01458262
[PPYF] human gut metagenome; stool from patient with Crohn's disease
9932
9860
-
Ala
CGC
[ENA]
¢þ
>W141402928
JDVW01000003
Bacillota
Pediococcus pentosaceus CGMCC 7049 [JDVW]
146
74
-
Ala
CGC
[ENA]
¡û
>WENV170659297
JXWR01003119
[JXWR] soil metagenome; rice field; ambient CO2
60553
60481
-
Ala
CGC
[ENA]
¢þ
>C181042789
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
1160878
1160806
-
Ala
CGC
-
¡û
>C191023268
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
117563
117491
-
Ala
CGC
-
¡û
>C191035376
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
87352
87280
-
Ala
CGC
-
¡û
>C191106174
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
607
679
+
Ala
CGC
-
¡û
>C191135614
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
84013
83941
-
Ala
CGC
-
¡û
>C191135672
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
89472
89400
-
Ala
CGC
-
¡û
>C191137805
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
1883622
1883694
+
Ala
CGC
-
¡û
>W09101472
AAEV01000009
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
3037
3109
+
Ala
CGC
[ENA]
¡û
>W1910181676
BJMF01000012
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
8357
8429
+
Ala
CGC
[ENA]
¡û
>W1910373934
FUHV01000008
Bacillota
Pediococcus acidilactici S7 [FUHV]
28665
28593
-
Ala
CGC
[ENA]
¡û
>C141009526
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
113858
113786
-
Ala
CGC
[Ensembl]
¡û
>W1911631247
PUFB01000002
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
9171
9243
+
Ala
CGC
[ENA]
¡û
>W1911696879
QNGC01000028
Bacillota
Pediococcus acidilactici GS1 [QNGC]
8762
8834
+
Ala
CGC
[ENA]
¡û
>W1911798456
QYRQ01000004
Bacillota
Pediococcus acidilactici WT [QYRQ]
30741
30669
-
Ala
CGC
[ENA]
¡û
>W1810000847
BEWQ01000014
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
7117
7045
-
Ala
CGC
[ENA]
¡û
>W1810049851
PCYQ01000009
Bacillota
Pediococcus acidilactici UMNPBX20 [PCYQ]
8339
8411
+
Ala
CGC
[ENA]
¡û
>W10105132
ACXB01000001
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
8287
8359
+
Ala
CGC
[ENA]
¡û
>W10127374
AEEG01000006
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
10563
10491
-
Ala
CGC
[ENA]
¡û
>W11107452
ACXB01000001
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
8287
8359
+
Ala
CGC
[ENA]
¡û
>W11134862
AEEG01000006
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
10563
10491
-
Ala
CGC
[ENA]
¡û
>C121006649
CP003137
Bacillota
Pediococcus claussenii ATCC BAA-344 [CP003137]
44373
44299
-
Ala
CGC
[Ensembl]
¡û
>C161092309
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
141075
141147
+
Ala
CGC
[Ensembl]
¡û
>W1610057761
BBZC01000002
Bacillota
Pediococcus pentosaceus [BBZC]
49762
49690
-
Ala
CGC
[ENA]
¡û
>W121011461
AGKB01000001
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
89415
89343
-
Ala
CGC
[ENA]
¡û
>W1610527757
JQAQ01000008
Bacillota
Pediococcus acidilactici [JQAQ]
28572
28500
-
Ala
CGC
[ENA]
¡û
>W1610528250
JQBB01000006
Bacillota
Pediococcus claussenii [JQBB]
13879
13953
+
Ala
CGC
[ENA]
¡û
>W1610528422
JQBF01000007
Bacillota
Pediococcus pentosaceus [JQBF]
62388
62316
-
Ala
CGC
[ENA]
¡û
>W1610529223
JQBX01000007
Bacillota
Pediococcus stilesii [JQBX]
94985
94913
-
Ala
CGC
[ENA]
¡û
>W1610529489
JQCC01000011
Bacillota
Pediococcus acidilactici [JQCC]
34138
34066
-
Ala
CGC
[ENA]
¡û
>W1610530147
JQCQ01000003
Bacillota
Pediococcus argentinicus [JQCQ]
59366
59294
-
Ala
CGC
[ENA]
¡û
>W1610641759
LJBS01000001
Bacillota
Pediococcus acidilactici [LJBS]
11694
11622
-
Ala
CGC
[ENA]
¡û
>W1610650112
LJIU01000011
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
29667
29595
-
Ala
CGC
[ENA]
¡û
>W1610773985
LNUM01000002
Bacillota
Pediococcus acidilactici [LNUM]
8314
8386
+
Ala
CGC
[ENA]
¡û
>W1610855974
LQNM01000026
Bacillota
Pediococcus pentosaceus [LQNM]
2829
2757
-
Ala
CGC
[ENA]
¡û
>W1610856235
LQNQ01000032
Bacillota
Pediococcus acidilactici [LQNQ]
2701
2629
-
Ala
CGC
[ENA]
¡û
>W1610856297
LQNR01000085
Bacillota
Pediococcus acidilactici [LQNR]
2699
2627
-
Ala
CGC
[ENA]
¡û
>W1610873399
LRBW01000041
Bacillota
Pediococcus acidilactici [LRBW]
2699
2627
-
Ala
CGC
[ENA]
¡û
>W1610909522
LSFE01000018
Bacillota
Pediococcus pentosaceus [LSFE]
15174
15102
-
Ala
CGC
[ENA]
¡û
>W1611020851
LYUJ01000001
Bacillota
Pediococcus acidilactici [LYUJ]
222022
221950
-
Ala
CGC
[ENA]
¡û
>W1710054460
BBZC01000002
Bacillota
Pediococcus pentosaceus [BBZC]
49762
49690
-
Ala
CGC
[ENA]
¡û
>W1710629388
JQAQ01000008
Bacillota
Pediococcus acidilactici [JQAQ]
28572
28500
-
Ala
CGC
[ENA]
¡û
>W1710629840
JQBB01000006
Bacillota
Pediococcus claussenii [JQBB]
13879
13953
+
Ala
CGC
[ENA]
¡û
>W1710630012
JQBF01000007
Bacillota
Pediococcus pentosaceus [JQBF]
62388
62316
-
Ala
CGC
[ENA]
¡û
>W1710630813
JQBX01000007
Bacillota
Pediococcus stilesii [JQBX]
94985
94913
-
Ala
CGC
[ENA]
¡û
>W1710631079
JQCC01000011
Bacillota
Pediococcus acidilactici [JQCC]
34138
34066
-
Ala
CGC
[ENA]
¡û
>W1710631737
JQCQ01000003
Bacillota
Pediococcus argentinicus [JQCQ]
59366
59294
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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