This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284183 (88 seq.)
>W1711120145
LUFR01000030
Gammaproteobacteria
Francisella hispaniensis FSC454 [LUFR]
14825
14900
+
Lys
TTT
[ENA]
¡û
>W1711955926
NBTB01000001
Gammaproteobacteria
Francisella tularensis [NBTB]
1459779
1459704
-
Lys
TTT
[ENA]
¡û
>C171002443
CP009653
Gammaproteobacteria
Francisella tularensis subsp. novicida AL97-2214 [CP009653]
696127
696202
+
Lys
TTT
-
¡û
>C171002496
CP009654
Gammaproteobacteria
Francisella frigiditurris CA97-1460 [CP009654]
1842954
1842879
-
Lys
TTT
-
¡û
>C171002497
CP009654
Gammaproteobacteria
Francisella frigiditurris CA97-1460 [CP009654]
1842847
1842772
-
Lys
TTT
-
¡û
>C171002550
CP009682
Gammaproteobacteria
Francisella tularensis subsp. novicida AZ06-7470 [CP009682]
1149288
1149213
-
Lys
TTT
-
¡û
>C171050426
CP016635
Gammaproteobacteria
Francisella tularensis subsp. novicida PA10-7858 [CP016635]
687531
687606
+
Lys
TTT
-
¡û
>C171051160
CP016796
Gammaproteobacteria
Francisella uliginis TX07-7310 [CP016796]
1519769
1519844
+
Lys
TTT
-
¡û
>C171053728
CP016930
Gammaproteobacteria
Francisella sp. MA067296 [CP016930]
1199517
1199442
-
Lys
TTT
-
¡û
>C171058044
CP017153
Gammaproteobacteria
Francisella tularensis [CP017153]
1353456
1353381
-
Lys
TTT
-
¡û
>C171058082
CP017154
Gammaproteobacteria
Francisella tularensis [CP017154]
1354016
1353941
-
Lys
TTT
-
¡û
>C171058120
CP017155
Gammaproteobacteria
Francisella tularensis [CP017155]
1353250
1353175
-
Lys
TTT
-
¡û
>C171072618
CP018093
Gammaproteobacteria
Francisella hispaniensis FSC454 CCUG 58020 [CP018093]
617667
617742
+
Lys
TTT
-
¡û
>W131043612
AMPP01000020
Gammaproteobacteria
Francisella tularensis subsp. tularensis 70001275 [AMPP]
35855
35780
-
Lys
TTT
[ENA]
¡û
>W131043802
AMPU01000032
Gammaproteobacteria
Francisella tularensis subsp. tularensis AS_713 [AMPU]
21718
21643
-
Lys
TTT
[ENA]
¡û
>W131043834
AMPV01000034
Gammaproteobacteria
Francisella tularensis subsp. tularensis 831 [AMPV]
21694
21619
-
Lys
TTT
[ENA]
¡û
>W131043857
AMPW01000036
Gammaproteobacteria
Francisella tularensis subsp. tularensis 80700075 [AMPW]
41616
41541
-
Lys
TTT
[ENA]
¡û
>W131043898
AMPX01000041
Gammaproteobacteria
Francisella tularensis subsp. tularensis 80700103 [AMPX]
21652
21577
-
Lys
TTT
[ENA]
¡û
>W131043931
AMPY01000023
Gammaproteobacteria
Francisella tularensis subsp. tularensis 70102010 [AMPY]
21701
21626
-
Lys
TTT
[ENA]
¡û
>W131100045
AOUD01000018
Gammaproteobacteria
Francisella tularensis subsp. tularensis 3571 [AOUD]
35937
35862
-
Lys
TTT
[ENA]
¡û
>W131110654
APKV01000008
Gammaproteobacteria
Francisella tularensis subsp. tularensis 80700069 [APKV]
41713
41638
-
Lys
TTT
[ENA]
¡û
>W131110686
APKW01000011
Gammaproteobacteria
Francisella tularensis subsp. tularensis 79201237 [APKW]
41755
41680
-
Lys
TTT
[ENA]
¡û
>W131110718
APKX01000007
Gammaproteobacteria
Francisella tularensis subsp. tularensis 80700075 [APKX]
41752
41677
-
Lys
TTT
[ENA]
¡û
>W131110750
APKY01000006
Gammaproteobacteria
Francisella tularensis subsp. tularensis 1378 [APKY]
41753
41678
-
Lys
TTT
[ENA]
¡û
>C009615
AM286280
Gammaproteobacteria
Francisella tularensis subsp. tularensis FSC198 FSC 198 [AM286280]
1353857
1353782
-
Lys
TTT
[Ensembl]
¡û
>C009727
AJ749949
Gammaproteobacteria
Francisella tularensis subsp. tularensis SCHU S4 [AJ749949]
1354050
1353975
-
Lys
TTT
[Ensembl]
¡û
>C009742
CP000439
Gammaproteobacteria
Francisella tularensis subsp. novicida U112 [CP000439]
690857
690932
+
Lys
TTT
[Ensembl]
¡û
>C009800
CP000608
Gammaproteobacteria
Francisella tularensis subsp. tularensis WY96-3418 [CP000608]
1397189
1397114
-
Lys
TTT
[Ensembl]
¡û
>w025829
ABAH01000008
Gammaproteobacteria
Francisella tularensis subsp. novicida GA99-3548 [ABAH]
221180
221255
+
Lys
TTT
[ENA]
¡û
>w023818
AAYF01000006
Gammaproteobacteria
Francisella tularensis subsp. novicida GA99-3549 [AAYF]
186152
186227
+
Lys
TTT
[ENA]
¡û
>w023798
AAYE01000011
Gammaproteobacteria
Francisella tularensis subsp. tularensis FSC033 [AAYE]
40173
40101
-
Lys
TTT
[ENA]
¡û
>WENV180000133
CZVZ01002179
[CZVZ] metagenome; unknown
3504
3579
+
Lys
TTT
[ENA]
¢þ
>W141137419
AWHF01000046
Gammaproteobacteria
Francisella sp. W12-1067 [AWHF]
7580
7655
+
Lys
TTT
[ENA]
¡û
>WENV181415040
OGCL01003270
[OGCL] hot springs metagenome; Hot spring water
8344
8419
+
Lys
TTT
[ENA]
¢þ
>W08010749
ABRI01000018
Gammaproteobacteria
Francisella tularensis subsp. tularensis MA00-2987 [ABRI]
40173
40101
-
Lys
TTT
[ENA]
¡û
>W08011277
ABSS01000002
Gammaproteobacteria
Francisella tularensis subsp. novicida FTE [ABSS]
214723
214798
+
Lys
TTT
[ENA]
¡û
>C08005120
CP000915
Gammaproteobacteria
Francisella tularensis subsp. mediasiatica FSC147 FSC147; GIEM 543 [CP000915]
1436995
1436923
-
Lys
TTT
[Ensembl]
¡û
>C181052690
CP021490
Gammaproteobacteria
Francisella tularensis subsp. novicida TCH2015 [CP021490]
1492847
1492772
-
Lys
TTT
-
¡û
>C181059152
CP022132
Gammaproteobacteria
Francisella halioticida DSM 23729 [CP022132]
1004311
1004236
-
Lys
TTT
-
¡û
>C181063383
CP022375
Gammaproteobacteria
Francisella opportunistica 14-2155 [CP022375]
1202171
1202096
-
Lys
TTT
-
¡û
>C181063421
CP022376
Gammaproteobacteria
Francisella opportunistica MA06-7296 [CP022376]
1206481
1206406
-
Lys
TTT
-
¡û
>C181063459
CP022377
Gammaproteobacteria
Francisella opportunistica PA05-1188 [CP022377]
1207526
1207451
-
Lys
TTT
-
¡û
>W141569297
JIDR01000001
Gammaproteobacteria
Francisella tularensis subsp. tularensis str. SCHU S4 substr. FTS-634/635 [JIDR]
1350740
1350665
-
Lys
TTT
[ENA]
¡û
>W141569335
JIDS01000002
Gammaproteobacteria
Francisella tularensis subsp. tularensis str. SCHU S4 substr. FSC043 [JIDS]
975290
975215
-
Lys
TTT
[ENA]
¡û
>W141569369
JIDT01000002
Gammaproteobacteria
Francisella tularensis subsp. tularensis str. SCHU S4 substr. SL [JIDT]
969941
969866
-
Lys
TTT
[ENA]
¡û
>W141569411
JIDU01000002
Gammaproteobacteria
Francisella tularensis subsp. tularensis str. SCHU S4 substr. NR-643 [JIDU]
1045306
1045231
-
Lys
TTT
[ENA]
¡û
>W141569451
JIDV01000003
Gammaproteobacteria
Francisella tularensis subsp. tularensis str. SCHU S4 substr. NR-10492 [JIDV]
70153
70078
-
Lys
TTT
[ENA]
¡û
>W141569487
JIDW01000001
Gammaproteobacteria
Francisella tularensis subsp. tularensis str. SCHU S4 substr. NR-28534 [JIDW]
1351018
1350943
-
Lys
TTT
[ENA]
¡û
>W09112612
ABXZ01000001
Gammaproteobacteria
Francisella tularensis FTG [ABXZ]
207680
207755
+
Lys
TTT
[ENA]
¡û
>W141779958
JOOR01000006
Gammaproteobacteria
Francisella tularensis [JOOR]
53510
53585
+
Lys
TTT
[ENA]
¡û
>W141779994
JOOS01000001
Gammaproteobacteria
Francisella tularensis [JOOS]
36405
36330
-
Lys
TTT
[ENA]
¡û
>W141780005
JOOT01000017
Gammaproteobacteria
Francisella tularensis subsp. novicida [JOOT]
41084
41159
+
Lys
TTT
[ENA]
¡û
>W141780071
JOOU01000022
Gammaproteobacteria
Francisella tularensis [JOOU]
64549
64624
+
Lys
TTT
[ENA]
¡û
>W141780086
JOOV01000018
Gammaproteobacteria
Francisella tularensis [JOOV]
67449
67374
-
Lys
TTT
[ENA]
¡û
>W141789961
JOUF01000014
Gammaproteobacteria
Francisella tularensis [JOUF]
21684
21609
-
Lys
TTT
[ENA]
¡û
>W141790414
JOVO01000016
Gammaproteobacteria
Francisella tularensis [JOVO]
326344
326419
+
Lys
TTT
[ENA]
¡û
>W141803339
JPGP01000010
Gammaproteobacteria
Francisella tularensis [JPGP]
22323
22248
-
Lys
TTT
[ENA]
¡û
>C141010040
CP006875
Gammaproteobacteria
Francisella orientalis LADL 07-285A LADL--07-285A [CP006875]
697358
697433
+
Lys
TTT
[Ensembl]
¡û
>W1911687797
QLIS01000003
Gammaproteobacteria
Pseudofrancisella aestuarii SYSU WZ-2 [QLIS]
82841
82916
+
Lys
TTT
[ENA]
¡û
>W1911687798
QLIS01000003
Gammaproteobacteria
Pseudofrancisella aestuarii SYSU WZ-2 [QLIS]
82947
83022
+
Lys
TTT
[ENA]
¡û
>W1810779462
QQOH01000006
Gammaproteobacteria
Motiliproteus coralliicola C34 [QQOH]
139479
139404
-
Lys
TTT
[ENA]
¡û
>W1810779463
QQOH01000006
Gammaproteobacteria
Motiliproteus coralliicola C34 [QQOH]
139366
139291
-
Lys
TTT
[ENA]
¡û
>C151049701
CP009353
Gammaproteobacteria
Francisella tularensis subsp. novicida F6168 [CP009353]
19932
19857
-
Lys
TTT
[Ensembl]
¡û
>C151054388
CP009574
Gammaproteobacteria
Francisella sp. FSC1006 [CP009574]
1862309
1862384
+
Lys
TTT
[Ensembl]
¡û
>C151055394
CP009607
Gammaproteobacteria
Francisella tularensis subsp. novicida D9876 [CP009607]
209596
209521
-
Lys
TTT
[Ensembl]
¡û
>C151056328
CP009633
Gammaproteobacteria
Francisella tularensis subsp. novicida U112 [CP009633]
1439903
1439828
-
Lys
TTT
[Ensembl]
¡û
>C151058761
CP009753
Gammaproteobacteria
Francisella tularensis subsp. tularensis WY-00W4114 [CP009753]
1397750
1397675
-
Lys
TTT
[Ensembl]
¡û
>C151064576
CP010103
Gammaproteobacteria
Francisella tularensis subsp. novicida DPG 3A-IS [CP010103]
1412630
1412555
-
Lys
TTT
[Ensembl]
¡û
>C151064819
CP010115
Gammaproteobacteria
Francisella tularensis subsp. tularensis NIH B-38 [CP010115]
1207861
1207936
+
Lys
TTT
[Ensembl]
¡û
>C151065746
CP010290
Gammaproteobacteria
Francisella tularensis subsp. tularensis SCHU S4 SHU-S4 [CP010290]
1353767
1353842
+
Lys
TTT
[Ensembl]
¡û
>C151068592
CP010427
Gammaproteobacteria
Allofrancisella guangzhouensis 08HL01032 [CP010427]
1328398
1328323
-
Lys
TTT
[Ensembl]
¡û
>C151069730
CP010446
Gammaproteobacteria
Francisella tularensis subsp. tularensis str. SCHU S4 substr. [CP010446]
1353924
1353849
-
Lys
TTT
[Ensembl]
¡û
>C151089994
CP012037
Gammaproteobacteria
Francisella tularensis subsp. tularensis WY96 [CP012037]
353183
353108
-
Lys
TTT
-
¡û
>C151094511
CP012372
Gammaproteobacteria
Francisella tularensis subsp. tularensis MA00-2987 [CP012372]
1353754
1353679
-
Lys
TTT
-
¡û
>C10106994
CP001633
Gammaproteobacteria
Francisella tularensis subsp. tularensis NE061598 [CP001633]
1747283
1747208
-
Lys
TTT
[Ensembl]
¡û
>C11109157
CP002558
Gammaproteobacteria
Francisella hispaniensis 3523 [CP002558]
612629
612704
+
Lys
TTT
[Ensembl]
¡û
>C11109239
CP002557
Gammaproteobacteria
Francisella cf. novicida Fx1 [CP002557]
667854
667929
+
Lys
TTT
[Ensembl]
¡û
>C11109299
CP002872
Gammaproteobacteria
Francisella salina TX07-7308 [CP002872]
1700724
1700649
-
Lys
TTT
[Ensembl]
¡û
>C11109300
CP002872
Gammaproteobacteria
Francisella salina TX07-7308 [CP002872]
1700611
1700536
-
Lys
TTT
[Ensembl]
¡û
>C121004638
CP003048
Gammaproteobacteria
Francisella tularensis subsp. tularensis TIGB03 [CP003048]
1429823
1429748
-
Lys
TTT
[Ensembl]
¡û
>C121004676
CP003049
Gammaproteobacteria
Francisella tularensis subsp. tularensis TI0902 [CP003049]
1353916
1353841
-
Lys
TTT
[Ensembl]
¡û
>C161024585
CP010287
Gammaproteobacteria
Francisella tularensis subsp. tularensis Scherm [CP010287]
1109618
1109543
-
Lys
TTT
[Ensembl]
¡û
>C161042458
CP012505
Gammaproteobacteria
Francisella persica ATCC VR-331 FSC845 [CP012505]
737278
737203
-
Lys
TTT
-
¡û
>C161049720
CP013022
Gammaproteobacteria
Francisella persica ATCC VR-331 [CP013022]
1351200
1351125
-
Lys
TTT
-
¡û
>W1610931461
LUFR01000030
Gammaproteobacteria
Francisella hispaniensis FSC454 [LUFR]
14825
14900
+
Lys
TTT
[ENA]
¡û
>W1710509860
FMXN01000003
Gammaproteobacteria
Pseudidiomarina indica [FMXN]
210076
210151
+
Lys
TTT
[ENA]
¡û
>W1710509861
FMXN01000003
Gammaproteobacteria
Pseudidiomarina indica [FMXN]
210184
210259
+
Lys
TTT
[ENA]
¡û
>W1710641492
JRXS01000006
Gammaproteobacteria
Francisella sp. TX07-6608 TX076608 [JRXS]
1491655
1491580
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK