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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284274 (19 seq.)
>W131182126
ARQC01000582
Rhodothermota
Salinibacter sp. J07SB67 [ARQC]
413
340
-
Glu
CTC
[ENA]
¡û
>C171105893
CP020382
Rhodothermota
Rhodothermaceae bacterium RA [CP020382]
1190586
1190513
-
Glu
TTC
-
¡û
>C171105894
CP020382
Rhodothermota
Rhodothermaceae bacterium RA [CP020382]
1190400
1190327
-
Glu
CTC
-
¡û
>C024122
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
3313756
3313684
-
Glu
CTC
[Ensembl]
¡û
>ENV08001746
ABOD01001150
saltern metagenome; microbial fraction from high salinity saltern in San Diego, CA
31
104
+
Glu
CTC
[ENA]
¡û
>WENV170772510
LXNJ01000011
[LXNJ] sponge metagenome; marine sponge reef
8307
8232
-
Glu
TTC
[ENA]
¢þ
>C181188766
CP030158
Rhodothermota
Roseithermus sacchariphilus MEBiC09517 [CP030158]
3072373
3072446
+
Glu
TTC
-
¡û
>C181192111
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
3361242
3361169
-
Glu
CTC
-
¡û
>C191072375
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
3524362
3524289
-
Glu
CTC
-
¡û
>C191072419
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
3339267
3339194
-
Glu
CTC
-
¡û
>C191072465
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
3547521
3547448
-
Glu
CTC
-
¡û
>C191072509
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
3292650
3292577
-
Glu
CTC
-
¡û
>C191072554
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
3496468
3496395
-
Glu
CTC
-
¡û
>W1910870060
NCQX01000056
Rhodothermota
Salinibacter ruber SP273 [NCQX]
10054
9981
-
Glu
CTC
[ENA]
¡û
>W1910870103
NCQY01000023
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
28025
27952
-
Glu
CTC
[ENA]
¡û
>W1910870147
NCQZ01000040
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
181275
181348
+
Glu
CTC
[ENA]
¡û
>W1910870196
NCRA01000031
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
28637
28564
-
Glu
CTC
[ENA]
¡û
>C131018241
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
3384748
3384675
-
Glu
CTC
[Ensembl]
¡û
>W1610875530
LRDG01000067
Rhodothermota
Rhodothermaceae bacterium RA [LRDG]
576138
576065
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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