This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284278 (34 seq.)
>W1710858986
LMBR01000060
Chlorobiota
Chlorobium limicola [LMBR]
18423
18350
-
Arg
CCT
[ENA]
¡û
>W1711136066
LUZT01000006
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
115675
115748
+
Arg
CCT
[ENA]
¡û
>W1711167303
LVWG01000021
Chlorobiota
Pelodictyon luteolum [LVWG]
81438
81365
-
Arg
CCT
[ENA]
¡û
>C171049440
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
250717
250790
+
Arg
CCT
-
¡û
>C171113988
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
249480
249553
+
Arg
CCT
-
¡û
>C006618
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
194001
193926
-
Arg
CCT
[Ensembl]
¡û
>C007033
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
1923656
1923584
-
Arg
CCT
[Ensembl]
¡û
>C016750
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
2205313
2205241
-
Arg
CCT
[Ensembl]
¡û
>C018255
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
1809471
1809396
-
Arg
CCT
[Ensembl]
¡û
>w007145
AAIJ01000002
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
18639
18562
-
Arg
CCT
[ENA]
¡û
>w006973
AAIC01000063
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
9933
9856
-
Arg
CCT
[ENA]
¡û
>w006098
AAHJ01000005
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
130663
130740
+
Arg
CCT
[ENA]
¡û
>WENV181232329
OFEN01000053
[OFEN] coral metagenome; NA
16348
16421
+
Arg
CCT
[ENA]
¢þ
>WENV181232341
OFEN01000087
[OFEN] coral metagenome; NA
4065
4138
+
Arg
CCT
[ENA]
¢þ
>WENV181233213
OFES01000006
[OFES] coral metagenome; NA
175563
175636
+
Arg
CCT
[ENA]
¢þ
>WENV181233224
OFES01000010
[OFES] coral metagenome; NA
139989
140062
+
Arg
CCT
[ENA]
¢þ
>WENV181303847
OFHR01000003
[OFHR] coral metagenome; NA
15900
15827
-
Arg
CCT
[ENA]
¢þ
>WENV181303873
OFHR01000086
[OFHR] coral metagenome; NA
7725
7652
-
Arg
CCT
[ENA]
¢þ
>C08003508
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
2556034
2555961
-
Arg
CCT
[Ensembl]
¡û
>C08003628
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
298271
298347
+
Arg
CCT
[Ensembl]
¡û
>C08007147
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
281143
281216
+
Arg
CCT
[Ensembl]
¡û
>WENV183513252
OMKS01003648
[OMKS] sediment metagenome; hot spring sediment
7703
7776
+
Arg
CCT
[ENA]
¢þ
>WENV170613589
FUWD012814623
[FUWD] metagenome; unknown
8196
8269
+
Arg
CCT
[ENA]
¢þ
>WENV170623731
FUWD013170141
[FUWD] metagenome; unknown
5228
5155
-
Arg
CCT
[ENA]
¢þ
>WENV170632009
FUWD013377294
[FUWD] metagenome; unknown
5228
5155
-
Arg
CCT
[ENA]
¢þ
>C181068764
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
273494
273567
+
Arg
CCT
-
¡û
>W09102641
AAIB01000004
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
99764
99839
+
Arg
CCT
[ENA]
¡û
>W09103346
AAJD01000003
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
190492
190567
+
Arg
CCT
[ENA]
¡û
>W1810062188
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
2122866
2122793
-
Arg
CCT
[ENA]
¡û
>W1810062227
PDNY01000011
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
2425
2352
-
Arg
CCT
[ENA]
¡û
>W1810062259
PDNZ01000003
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
246611
246538
-
Arg
CCT
[ENA]
¡û
>W1610721332
LMBR01000060
Chlorobiota
Chlorobium limicola [LMBR]
18423
18350
-
Arg
CCT
[ENA]
¡û
>W1610947186
LUZT01000006
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
115675
115748
+
Arg
CCT
[ENA]
¡û
>W1610977634
LVWG01000021
Chlorobiota
Pelodictyon luteolum [LVWG]
81438
81365
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK