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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284281 (37 seq.)
>W1710858996
LMBR01000092
Chlorobiota
Chlorobium limicola [LMBR]
10755
10680
-
Phe
GAA
[ENA]
¡û
>W1711136063
LUZT01000005
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
340899
340824
-
Phe
GAA
[ENA]
¡û
>W1711626093
MPJE01000076
Chlorobiota
Chlorobium sp. KB01 [MPJE]
53880
53807
-
Phe
GAA
[ENA]
¡û
>C171049463
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
1908351
1908276
-
Phe
GAA
-
¡û
>C171060557
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
316326
316401
+
Phe
GAA
-
¡û
>C171114015
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
1894177
1894102
-
Phe
GAA
-
¡û
>C005291
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
457755
457827
+
Phe
GAA
[Ensembl]
¡û
>C006580
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
473467
473542
+
Phe
GAA
[Ensembl]
¡û
>C007011
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
311834
311909
+
Phe
GAA
[Ensembl]
¡û
>w018033
AASE01000008
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
27573
27496
-
Phe
GAA
[ENA]
¡û
>w007182
AAIK01000001
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
282339
282267
-
Phe
GAA
[ENA]
¡û
>w007171
AAIJ01000016
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
14031
14106
+
Phe
GAA
[ENA]
¡û
>w006958
AAIC01000022
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
13965
14040
+
Phe
GAA
[ENA]
¡û
>w006115
AAHJ01000015
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
33581
33658
+
Phe
GAA
[ENA]
¡û
>WENV181232299
OFEN01000003
[OFEN] coral metagenome; NA
132706
132780
+
Phe
GAA
[ENA]
¢þ
>WENV181233205
OFES01000001
[OFES] coral metagenome; NA
110910
110835
-
Phe
GAA
[ENA]
¢þ
>WENV181233225
OFES01000011
[OFES] coral metagenome; NA
49821
49746
-
Phe
GAA
[ENA]
¢þ
>WENV181303843
OFHR01000001
[OFHR] coral metagenome; NA
54473
54548
+
Phe
GAA
[ENA]
¢þ
>WENV181303889
OFHR01002249
[OFHR] coral metagenome; NA
2662
2736
+
Phe
GAA
[ENA]
¢þ
>C08003495
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
398403
398478
+
Phe
GAA
[Ensembl]
¡û
>C08003653
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
2136838
2136763
-
Phe
GAA
[Ensembl]
¡û
>C08003612
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
1904278
1904206
-
Phe
GAA
[Ensembl]
¡û
>C08003800
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
1393494
1393569
+
Phe
GAA
[Ensembl]
¡û
>C08007689
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
452501
452576
+
Phe
GAA
[Ensembl]
¡û
>C08007174
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
1945298
1945226
-
Phe
GAA
[Ensembl]
¡û
>WENV183513808
OMKS01008132
[OMKS] sediment metagenome; hot spring sediment
3740
3665
-
Phe
GAA
[ENA]
¢þ
>WENV170620040
FUWD013024779
[FUWD] metagenome; unknown
3375
3300
-
Phe
GAA
[ENA]
¢þ
>WENV170620173
FUWD013026819
[FUWD] metagenome; unknown
3671
3746
+
Phe
GAA
[ENA]
¢þ
>WENV170628171
FUWD013242744
[FUWD] metagenome; unknown
3375
3300
-
Phe
GAA
[ENA]
¢þ
>WENV170628309
FUWD013244644
[FUWD] metagenome; unknown
3671
3746
+
Phe
GAA
[ENA]
¢þ
>C181068772
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
512819
512894
+
Phe
GAA
-
¡û
>W09102678
AAIB01000057
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
9017
9092
+
Phe
GAA
[ENA]
¡û
>W1810062162
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
504294
504369
+
Phe
GAA
[ENA]
¡û
>W1810062251
PDNY01000084
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
3494
3419
-
Phe
GAA
[ENA]
¡û
>W1810062257
PDNZ01000002
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
9198
9123
-
Phe
GAA
[ENA]
¡û
>W1610721342
LMBR01000092
Chlorobiota
Chlorobium limicola [LMBR]
10755
10680
-
Phe
GAA
[ENA]
¡û
>W1610947183
LUZT01000005
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
340899
340824
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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