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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284377 (25 seq.)
>W1711114538
LTZJ01000129
Bacillota
Candidatus Stoquefichus sp. KLE1796 [LTZJ]
24965
24890
-
His
GTG
[ENA]
¡û
>WENV180307390
OBJQ01000143
[OBJQ] human gut metagenome; human gut
27962
28037
+
His
GTG
[ENA]
¡û
>WENV181022906
ODWW01077333
[ODWW] human metagenome; G_DNA_Stool
150
223
+
His
GTG
[ENA]
¡û
>WENV181345478
OFML01000153
[OFML] human gut metagenome; human gut
43111
43036
-
His
GTG
[ENA]
¡û
>WENV182065704
OHFA01025071
[OHFA] human gut metagenome; feces
530
605
+
His
GTG
[ENA]
¡û
>WENV182129534
OHJZ01013098
[OHJZ] human gut metagenome; feces
126
201
+
His
GTG
[ENA]
¡û
>WENV182337547
OHZW01014885
[OHZW] human gut metagenome; feces
40
115
+
His
GTG
[ENA]
¡û
>WENV183784400
PPYF01259381
[PPYF] human gut metagenome; stool from patient with Crohn's disease
989
1064
+
His
GTG
[ENA]
¡û
>W1910228813
FNVY01000004
Bacillota
Enterococcus timonensis Marseille-P2817 [FNVY]
3967
4040
+
His
GTG
[ENA]
¡û
>W1910940689
NJAU01000001
Bacillota
Alteribacillus bidgolensis DSM 25260 [NJAU]
362706
362781
+
His
GTG
[ENA]
¡û
>W1911143739
NPBE01000010
Bacillota
Terribacillus saccharophilus 7504-1 [NPBE]
100
173
+
His
GTG
[ENA]
¡û
>W1911143880
NPBH01000013
Bacillota
Terribacillus saccharophilus 7509 [NPBH]
99
172
+
His
GTG
[ENA]
¡û
>W1911144037
NPBK01000003
Bacillota
Terribacillus saccharophilus 7517-W [NPBK]
721590
721517
-
His
GTG
[ENA]
¡û
>W1911144132
NPBL01000063
Bacillota
Terribacillus saccharophilus 7518 [NPBL]
100
173
+
His
GTG
[ENA]
¡û
>W1911144289
NPBP01000007
Bacillota
Terribacillus saccharophilus 7521 [NPBP]
10047
9974
-
His
GTG
[ENA]
¡û
>W1911144581
NPBV01000003
Bacillota
Terribacillus saccharophilus 7528 [NPBV]
312907
312834
-
His
GTG
[ENA]
¡û
>W1911332271
NUMR01000134
Bacillota
Bacillus cereus AFS039342 [NUMR]
1062
1137
+
His
GTG
[ENA]
¡û
>W1911348702
NUVT01000127
Bacillota
Bacillus cereus AFS085794 [NUVT]
1588
1513
-
His
GTG
[ENA]
¡û
>W2010254143
CABJAQ020000004
Bacillota
Erysipelotrichaceae bacterium [CABJAQ]
65289
65214
-
His
GTG
[ENA]
¡û
>W2011017592
NPBJ01000005
Bacillota
Terribacillus saccharophilus 7517-1 [NPBJ]
10038
9965
-
His
GTG
[ENA]
¡û
>W2011631148
SMCQ01000011
Bacillota
Longibaculum muris DSM 29487 [SMCQ]
28002
28077
+
His
GTG
[ENA]
¡û
>W2110098816
CAJFEE010000035
Bacillota
Candidatus Harrysmithimonas galli [CAJFEE]
17573
17498
-
His
GTG
[ENA]
¡û
>W2110340147
JADMQS010000012
Bacillota
Longibaculum muris 1001302B_160321_H8 [JADMQS]
24756
24831
+
His
GTG
[ENA]
¡û
>W1511403882
JTLM01000089
Bacillota
Carnobacterium sp. ZWU0011 [JTLM]
180
255
+
His
GTG
[ENA]
¡û
>W1610927235
LTZJ01000129
Bacillota
Candidatus Stoquefichus sp. KLE1796 [LTZJ]
24965
24890
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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