This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284400 (34 seq.)
>W1711097998
LTJE01000045
Bacteroidota
Weeksella sp. HMSC059D05 [LTJE]
65445
65370
-
Gly
TCC
[ENA]
¡û
>W1711098000
LTJE01000045
Bacteroidota
Weeksella sp. HMSC059D05 [LTJE]
64729
64654
-
Gly
TCC
[ENA]
¡û
>W131181257
ARNT01000028
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
108473
108548
+
Gly
TCC
[ENA]
¡û
>W131181259
ARNT01000028
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
112409
112482
+
Gly
TCC
[ENA]
¡û
>W131181261
ARNT01000028
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
112626
112699
+
Gly
TCC
[ENA]
¡û
>W131181263
ARNT01000028
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
117820
117745
-
Gly
TCC
[ENA]
¡û
>W131181281
ARNT01000031
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
177652
177577
-
Gly
TCC
[ENA]
¡û
>W141266223
CCMH01000003
Bacteroidota
Weeksella massiliensis FF8 [CCMH]
81199
81274
+
Gly
TCC
[ENA]
¡û
>W141266225
CCMH01000003
Bacteroidota
Weeksella massiliensis FF8 [CCMH]
81403
81478
+
Gly
TCC
[ENA]
¡û
>W141266230
CCMH01000003
Bacteroidota
Weeksella massiliensis FF8 [CCMH]
147663
147588
-
Gly
TCC
[ENA]
¡û
>WENV183727556
PJTP01000018
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
72487
72560
+
Gly
TCC
[ENA]
¢þ
>WENV183727564
PJTP01000018
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
167952
167879
-
Gly
TCC
[ENA]
¢þ
>WENV183727636
PJTP01000054
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
66035
65962
-
Gly
TCC
[ENA]
¢þ
>C191210721
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
81226
81299
+
Gly
TCC
-
¡û
>C191210772
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
146206
146133
-
Gly
TCC
-
¡û
>C191210774
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
146000
145925
-
Gly
TCC
-
¡û
>W1511391140
JSYQ01000007
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
61797
61872
+
Gly
TCC
[ENA]
¡û
>W1511391144
JSYQ01000007
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
105429
105354
-
Gly
TCC
[ENA]
¡û
>W1511391146
JSYQ01000007
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
90619
90546
-
Gly
TCC
[ENA]
¡û
>W1511391148
JSYQ01000007
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
90404
90331
-
Gly
TCC
[ENA]
¡û
>C11123786
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
687909
687984
+
Gly
TCC
[Ensembl]
¡û
>C11123788
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
688115
688190
+
Gly
TCC
[Ensembl]
¡û
>C11123829
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
752889
752814
-
Gly
TCC
[Ensembl]
¡û
>W1710570192
FOUZ01000002
Bacteroidota
Algoriella xinjiangensis [FOUZ]
59267
59192
-
Gly
TCC
[ENA]
¡û
>W1710570194
FOUZ01000002
Bacteroidota
Algoriella xinjiangensis [FOUZ]
55654
55579
-
Gly
TCC
[ENA]
¡û
>W1710570201
FOUZ01000004
Bacteroidota
Algoriella xinjiangensis [FOUZ]
57735
57662
-
Gly
TCC
[ENA]
¡û
>W1710570203
FOUZ01000004
Bacteroidota
Algoriella xinjiangensis [FOUZ]
57519
57444
-
Gly
TCC
[ENA]
¡û
>W1710570211
FOUZ01000005
Bacteroidota
Algoriella xinjiangensis [FOUZ]
66735
66810
+
Gly
TCC
[ENA]
¡û
>W1710590759
FRBH01000001
Bacteroidota
Chishuiella changwenlii [FRBH]
51013
50938
-
Gly
TCC
[ENA]
¡û
>W1710590774
FRBH01000004
Bacteroidota
Chishuiella changwenlii [FRBH]
231880
231805
-
Gly
TCC
[ENA]
¡û
>W1710590776
FRBH01000004
Bacteroidota
Chishuiella changwenlii [FRBH]
231397
231324
-
Gly
TCC
[ENA]
¡û
>W1710590778
FRBH01000004
Bacteroidota
Chishuiella changwenlii [FRBH]
231179
231106
-
Gly
TCC
[ENA]
¡û
>W1710590780
FRBH01000004
Bacteroidota
Chishuiella changwenlii [FRBH]
230963
230888
-
Gly
TCC
[ENA]
¡û
>W1710590782
FRBH01000004
Bacteroidota
Chishuiella changwenlii [FRBH]
230602
230527
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK