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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284401 (66 seq.)
>WENV180317355
OBKJ01127517
[OBKJ] metagenome; hydrothermal vent
179
106
-
Ala
TGC
[ENA]
¡û
>WENV180544300
OCIP01051596
[OCIP] human gut metagenome; human gut
93
18
-
Ala
TGC
[ENA]
¡û
>WENV180544618
OCIQ01071202
[OCIQ] human gut metagenome; human gut
127
52
-
Ala
TGC
[ENA]
¡û
>WENV180545503
OCIT01037962
[OCIT] human gut metagenome; human gut
98
23
-
Ala
TGC
[ENA]
¡û
>WENV180962572
ODUN01016242
[ODUN] human metagenome; G_DNA_Stool
207
282
+
Ala
TGC
[ENA]
¡û
>WENV181023749
ODWX01008798
[ODWX] human metagenome; G_DNA_Stool
2537
2612
+
Ala
TGC
[ENA]
¡û
>WENV181336642
OFMD01002140
[OFMD] human gut metagenome; human gut
5617
5542
-
Ala
TGC
[ENA]
¡û
>WENV181741959
OGQK01005767
[OGQK] human gut metagenome; faeces
3798
3723
-
Ala
TGC
[ENA]
¡û
>WENV181746926
OGQN01006248
[OGQN] human gut metagenome; faeces
2318
2393
+
Ala
TGC
[ENA]
¡û
>WENV181891146
OGXO01006376
[OGXO] human gut metagenome; faeces
3703
3628
-
Ala
TGC
[ENA]
¡û
>WENV181894070
OGXQ01018767
[OGXQ] human gut metagenome; faeces
1105
1030
-
Ala
TGC
[ENA]
¡û
>WENV181989487
OHAO01011692
[OHAO] human gut metagenome; faeces
2695
2620
-
Ala
TGC
[ENA]
¡û
>WENV181995993
OHAT01021179
[OHAT] human gut metagenome; faeces
1077
1002
-
Ala
TGC
[ENA]
¡û
>WENV182182292
OHNQ01009280
[OHNQ] human gut metagenome; feces
1850
1775
-
Ala
TGC
[ENA]
¡û
>WENV182254558
OHTB01029029
[OHTB] human gut metagenome; feces
438
363
-
Ala
TGC
[ENA]
¡û
>WENV182294584
OHWE01000020
[OHWE] human gut metagenome; feces
139986
139911
-
Ala
TGC
[ENA]
¡û
>WENV182380840
OIDP01010822
[OIDP] human gut metagenome; feces
739
814
+
Ala
TGC
[ENA]
¡û
>WENV182538042
OIXH01033104
[OIXH] human gut metagenome; faeces
787
862
+
Ala
TGC
[ENA]
¡û
>WENV182652845
OJMH01044820
[OJMH] human gut metagenome; feces
843
768
-
Ala
TGC
[ENA]
¡û
>WENV182711072
OJPD01004422
[OJPD] human gut metagenome; stool sample
658
733
+
Ala
TGC
[ENA]
¡û
>WENV182728447
OJPW01006648
[OJPW] human gut metagenome; stool sample
2184
2109
-
Ala
TGC
[ENA]
¡û
>WENV182730730
OJPZ01003051
[OJPZ] human gut metagenome; stool sample
944
1019
+
Ala
TGC
[ENA]
¡û
>WENV182740327
OJQL01008055
[OJQL] human gut metagenome; stool sample
1946
1871
-
Ala
TGC
[ENA]
¡û
>WENV182752574
OJRB01018548
[OJRB] human gut metagenome; stool sample
459
534
+
Ala
TGC
[ENA]
¡û
>WENV182883789
OKSB01036730
[OKSB] human gut metagenome; faeces
1106
1031
-
Ala
TGC
[ENA]
¡û
>WENV182892170
OKSH01024491
[OKSH] human gut metagenome; faeces
1105
1030
-
Ala
TGC
[ENA]
¡û
>WENV182916737
OKTT01026187
[OKTT] human gut metagenome; feces
719
644
-
Ala
TGC
[ENA]
¡û
>WENV183357378
OLXF01028607
[OLXF] human gut metagenome; feces
441
366
-
Ala
TGC
[ENA]
¡û
>WENV183371120
OLXV01007052
[OLXV] human gut metagenome; feces
3938
3863
-
Ala
TGC
[ENA]
¡û
>WENV183389070
OLZA01005641
[OLZA] human gut metagenome; feces
2031
1956
-
Ala
TGC
[ENA]
¡û
>WENV183420561
OMBA01008313
[OMBA] human gut metagenome; feces
2019
1944
-
Ala
TGC
[ENA]
¡û
>WENV183434531
OMBZ01007459
[OMBZ] human gut metagenome; feces
2166
2091
-
Ala
TGC
[ENA]
¡û
>WENV183488174
OMFY01005835
[OMFY] human gut metagenome; feces
2207
2132
-
Ala
TGC
[ENA]
¡û
>WENV183493024
OMGI01003972
[OMGI] human gut metagenome; human gut
5129
5054
-
Ala
TGC
[ENA]
¡û
>WENV183501917
OMGS01016170
[OMGS] human gut metagenome; human gut
148
223
+
Ala
TGC
[ENA]
¡û
>WENV183505586
OMGX01007835
[OMGX] human gut metagenome; human gut
461
536
+
Ala
TGC
[ENA]
¡û
>WENV183521743
OMNU01024515
[OMNU] human gut metagenome; feces
672
597
-
Ala
TGC
[ENA]
¡û
>WENV183789006
PPYF01372688
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1347
1422
+
Ala
TGC
[ENA]
¡û
>WENV170029064
CDYF01029446
[CDYF] gut metagenome; human stools
3574
3499
-
Ala
TGC
[ENA]
¡û
>WENV170031531
CDYI01059259
[CDYI] gut metagenome; human stools
356
431
+
Ala
TGC
[ENA]
¡û
>WENV170032540
CDYK01005974
[CDYK] gut metagenome; human stools
544
619
+
Ala
TGC
[ENA]
¡û
>WENV170049405
CDZA01060873
[CDZA] gut metagenome; human stools
769
694
-
Ala
TGC
[ENA]
¡û
>WENV170276895
CERO01057330
[CERO] marine metagenome genome assembly TARA_068_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
99
171
+
Ala
TGC
[ENA]
¡û
>W09118209
ACCT01000001
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 [ACCT]
901811
901736
-
Ala
TGC
[ENA]
¡û
>C09103827
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
460879
460954
+
Ala
TGC
[Ensembl]
¡û
>C09103851
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
2041243
2041168
-
Ala
TGC
[Ensembl]
¡û
>C09103857
CP001358
Thermodesulfobacteriota
Desulfovibrio desulfuricans [CP001358]
1490446
1490371
-
Ala
TGC
[Ensembl]
¡û
>W2010262313
CABKMQ020000001
Thermodesulfobacteriota
Desulfovibrionaceae bacterium [CABKMQ]
75669
75744
+
Ala
TGC
[ENA]
¡û
>W2010262325
CABKMQ020000003
Thermodesulfobacteriota
Desulfovibrionaceae bacterium [CABKMQ]
1370980
1371055
+
Ala
TGC
[ENA]
¡û
>W2010262330
CABKMQ020000003
Thermodesulfobacteriota
Desulfovibrionaceae bacterium [CABKMQ]
1793269
1793344
+
Ala
TGC
[ENA]
¡û
>C211424250
LT984798
Thermodesulfobacteriota
Desulfovibrio sp. G11 [LT984798]
2439338
2439413
+
Ala
TGC
-
¡û
>C211424255
LT984798
Thermodesulfobacteriota
Desulfovibrio sp. G11 [LT984798]
3131026
3131101
+
Ala
TGC
-
¡û
>C211424281
LT984798
Thermodesulfobacteriota
Desulfovibrio sp. G11 [LT984798]
859000
858925
-
Ala
TGC
-
¡û
>W10111726
ADDR01000239
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
3719
3644
-
Ala
TGC
[ENA]
¡û
>C241381360
LR738849
Thermodesulfobacteriota
Desulfovibrio sp. 86 [LR738849]
2114074
2114149
+
Ala
TGC
-
¡û
>C241381364
LR738849
Thermodesulfobacteriota
Desulfovibrio sp. 86 [LR738849]
2618906
2618981
+
Ala
TGC
-
¡û
>C241381369
LR738849
Thermodesulfobacteriota
Desulfovibrio sp. 86 [LR738849]
3383177
3383252
+
Ala
TGC
-
¡û
>W2310016759
BQNH01000001
Thermodesulfobacteriota
Desulfovibrionaceae bacterium CE91-St38 [BQNH]
1765375
1765300
-
Ala
TGC
[ENA]
¡û
>W2310016764
BQNH01000001
Thermodesulfobacteriota
Desulfovibrionaceae bacterium CE91-St38 [BQNH]
1412099
1412024
-
Ala
TGC
[ENA]
¡û
>W2310016766
BQNH01000001
Thermodesulfobacteriota
Desulfovibrionaceae bacterium CE91-St38 [BQNH]
1185635
1185560
-
Ala
TGC
[ENA]
¡û
>W11107030
ACWM01000085
Thermodesulfobacteriota
Desulfovibrio sp. 6_1_46AFAA [ACWM]
2012
2087
+
Ala
TGC
[ENA]
¡û
>W11114653
ADDR01000239
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
3719
3644
-
Ala
TGC
[ENA]
¡û
>C161068964
CP014229
Thermodesulfobacteriota
Desulfovibrio fairfieldensis CCUG 45958 [CP014229]
163812
163887
+
Ala
TGC
[Ensembl]
¡û
>C161068969
CP014229
Thermodesulfobacteriota
Desulfovibrio fairfieldensis CCUG 45958 [CP014229]
564781
564856
+
Ala
TGC
[Ensembl]
¡û
>C161068971
CP014229
Thermodesulfobacteriota
Desulfovibrio fairfieldensis CCUG 45958 [CP014229]
771995
772070
+
Ala
TGC
[Ensembl]
¡û
>W1710579891
FPIW01000116
Thermodesulfobacteriota
Desulfovibrio desulfuricans [FPIW]
1641
1566
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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