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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28458 (40 seq.)
>W1710853207
LLWK01000036
Bacteroidota
Flavobacterium sp. TAB 87 [LLWK]
198443
198356
-
Ser
GCT
[ENA]
¡û
>W131214035
ATTM01000002
Bacteroidota
Flavobacterium antarcticum DSM 19726 [ATTM]
66982
66895
-
Ser
GCT
[ENA]
¡û
>W131225368
AUDN01000007
Bacteroidota
Flavobacterium tegetincola DSM 22377 [AUDN]
230797
230886
+
Ser
GCT
[ENA]
¡û
>W131229094
AUGN01000001
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
344952
344865
-
Ser
GCT
[ENA]
¡û
>W1711743983
MUFW01000001
Bacteroidota
Flavobacterium sp. LM4 [MUFW]
1452230
1452143
-
Ser
GCT
[ENA]
¡û
>W1711751648
MUNX01000136
Bacteroidota
Flavobacterium sp. A45 [MUNX]
241
328
+
Ser
GCT
[ENA]
¡û
>WENV180594009
OCOY01010130
[OCOY] marine metagenome; ENVO:00002010
21
108
+
Ser
GCT
[ENA]
¡û
>W141291499
JASY01000007
Bacteroidota
Flavobacterium chungangense LMG 26729 [JASY]
158305
158218
-
Ser
GCT
[ENA]
¡û
>C191120489
CP034159
Bacteroidota
Kaistella carnis G0081 [CP034159]
85798
85711
-
Ser
GCT
-
¡û
>C191156064
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
2022727
2022640
-
Ser
GCT
-
¡û
>C191156067
CP037954
Bacteroidota
Chryseobacterium salivictor NBC 122 [CP037954]
2022342
2022255
-
Ser
GCT
-
¡û
>C191213006
LR134503
Bacteroidota
Kaistella jeonii NCTC13459 [LR134503]
53403
53316
-
Ser
GCT
-
¡û
>C09106230
CP001673
Bacteroidota
Flavobacteriaceae bacterium 3519-10 [CP001673]
593359
593270
-
Ser
GCT
[Ensembl]
¡û
>W1910933640
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
28767
28854
+
Ser
GCT
[ENA]
¡û
>W1810089353
PGER01000001
Bacteroidota
Flavobacterium sp. 1 [PGER]
2029319
2029232
-
Ser
GCT
[ENA]
¡û
>W1810265862
PQVG01000005
Bacteroidota
Flavobacterium alvei HR-AY [PQVG]
160826
160739
-
Ser
GCT
[ENA]
¡û
>W1810577030
QENX01000001
Bacteroidota
Flavobacterium sp. 103 [QENX]
59677
59590
-
Ser
GCT
[ENA]
¡û
>W2010613296
JABSNO010000008
Bacteroidota
Chryseobacterium sp. 16F [JABSNO]
76643
76730
+
Ser
GCT
[ENA]
¡û
>W2010982276
NIUY01000001
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
28767
28854
+
Ser
GCT
[ENA]
¡û
>W2011407849
RCZH01000019
Bacteroidota
Flavobacterium pectinovorum 42 [RCZH]
140391
140478
+
Ser
GCT
[ENA]
¡û
>W2011657769
SODM01000003
Bacteroidota
Flavobacterium sp. 270 [SODM]
559089
559176
+
Ser
GCT
[ENA]
¡û
>W2012432292
WSTB01000001
Bacteroidota
Flavobacterium sp. GA093 [WSTB]
724143
724056
-
Ser
GCT
[ENA]
¡û
>W2110079700
CAIJDO010000103
Bacteroidota
Flavobacterium chungangense [CAIJDO]
7440
7527
+
Ser
GCT
[ENA]
¡û
>W2110371524
JADPVI010000001
Bacteroidota
Kaistella gelatinilytica G5-32 [JADPVI]
200378
200291
-
Ser
GCT
[ENA]
¡û
>C201100287
CP041687
Bacteroidota
Chryseobacterium sp. SNU WT5 [CP041687]
2468018
2467931
-
Ser
GCT
-
¡û
>C211051548
CP040442
Bacteroidota
Kaistella flava (ex Peng et al. 2021) 7-3A [CP040442]
1769653
1769740
+
Ser
GCT
-
¡û
>C231193179
CP084528
Bacteroidota
Kaistella sp. GW4-15 [CP084528]
51642
51555
-
Ser
GCT
-
¡û
>C231241927
CP087583
Bacteroidota
Chryseobacterium faecale F4 [CP087583]
2217551
2217464
-
Ser
GCT
-
¡û
>C231558529
CP114289
Bacteroidota
Flavobacterium sp. IMCC36791 [CP114289]
1952718
1952631
-
Ser
GCT
-
¡û
>C231558544
CP114291
Bacteroidota
Flavobacterium sp. IMCC36793 [CP114291]
1672811
1672898
+
Ser
GCT
-
¡û
>W2130004444
CAIJDP010000071
Bacteroidota
Flavobacterium sp. T13(2019) [CAIJDP]
144187
144274
+
Ser
GCT
[ENA]
¡û
>W1511390888
JSYL01000005
Bacteroidota
Kaistella jeonii DSM 17048 [JSYL]
143527
143438
-
Ser
GCT
[ENA]
¡û
>W121086520
AKJZ01000027
Bacteroidota
Flavobacterium sp. CF136 [AKJZ]
8294
8207
-
Ser
GCT
[ENA]
¡û
>W1610716331
LLWK01000036
Bacteroidota
Flavobacterium sp. TAB 87 [LLWK]
198443
198356
-
Ser
GCT
[ENA]
¡û
>W1710538643
FNUS01000001
Bacteroidota
Halpernia humi [FNUS]
783547
783458
-
Ser
GCT
[ENA]
¡û
>W1710555837
FOJT01000006
Bacteroidota
Flavobacterium swingsii [FOJT]
95763
95850
+
Ser
GCT
[ENA]
¡û
>W1710557450
FOLA01000007
Bacteroidota
Kaistella jeonii [FOLA]
53800
53889
+
Ser
GCT
[ENA]
¡û
>W1710564840
FOQT01000005
Bacteroidota
Halpernia frigidisoli [FOQT]
221981
221892
-
Ser
GCT
[ENA]
¡û
>W1710585072
FQWB01000005
Bacteroidota
Flavobacterium fluvii [FQWB]
189120
189033
-
Ser
GCT
[ENA]
¡û
>W1710598919
FTOI01000006
Bacteroidota
Kaistella chaponensis chaponense [FTOI]
79529
79618
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK