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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.284846 (117 seq.)
>W1710802955
LJYF01000002
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
104741
104816
+
Thr
CGT
[ENA]
¡û
>W1710803005
LJYG01000004
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
42075
42000
-
Thr
CGT
[ENA]
¡û
>W1710877759
LMQJ01000056
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
156278
156203
-
Thr
CGT
[ENA]
¡û
>W1710891432
LNCU01000120
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
171427
171502
+
Thr
CGT
[ENA]
¡û
>W1711072986
LSIC01000073
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
230632
230707
+
Thr
CGT
[ENA]
¡û
>W1711124797
LUKO01000160
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
493597
493672
+
Thr
CGT
[ENA]
¡û
>W1711138886
LVEM01000002
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
189411
189336
-
Thr
CGT
[ENA]
¡û
>W1711180095
LWIG01000001
Alphaproteobacteria
Bradyrhizobium sacchari BR10280 [LWIG]
918060
918135
+
Thr
CGT
[ENA]
¡û
>W131170254
ARFJ01000027
Alphaproteobacteria
Bradyrhizobium japonicum USDA 124 [ARFJ]
28837
28912
+
Thr
CGT
[ENA]
¡û
>W131217302
ATWP01000003
Alphaproteobacteria
Bradyrhizobium japonicum is5 [ATWP]
344755
344830
+
Thr
CGT
[ENA]
¡û
>W131228680
AUGD01000003
Alphaproteobacteria
Bradyrhizobium japonicum in8p8 [AUGD]
170420
170345
-
Thr
CGT
[ENA]
¡û
>W1711636764
MPVQ01000094
Alphaproteobacteria
Bradyrhizobium brasilense UFLA 03-321 [MPVQ]
54799
54724
-
Thr
CGT
[ENA]
¡û
>W1711928906
NAFK01000163
Alphaproteobacteria
Bradyrhizobium canariense [NAFK]
43870
43795
-
Thr
CGT
[ENA]
¡û
>W1712049592
NFUH01000039
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
4930
4855
-
Thr
CGT
[ENA]
¡û
>C171021132
CP013127
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [CP013127]
611540
611465
-
Thr
CGT
-
¡û
>C003090
BA000040
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 USDA110 [BA000040]
604005
603930
-
Thr
CGT
[Ensembl]
¡û
>W141001321
ADOU01000118
Alphaproteobacteria
Bradyrhizobium diazoefficiens SEMIA 5080 [ADOU]
5305
5380
+
Thr
CGT
[ENA]
¡û
>W141007536
AGWZ01000001
Alphaproteobacteria
Afipia felis ATCC 53690 [AGWZ]
2965786
2965861
+
Thr
CGT
[ENA]
¡û
>W141041830
AMCQ01000053
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [AMCQ]
2546
2471
-
Thr
CGT
[ENA]
¡û
>w001324
AAAF01000015
Alphaproteobacteria
Rhodopseudomonas palustris [AAAF]
83174
83102
-
Thr
CGT
[ENA]
¡û
>W141043060
AMFB01000028
Alphaproteobacteria
Bradyrhizobium sp. DFCI-1 [AMFB]
85160
85235
+
Thr
CGT
[ENA]
¡û
>W141063660
APJD01000019
Alphaproteobacteria
Bradyrhizobium sp. OHSU_III [APJD]
102170
102245
+
Thr
CGT
[ENA]
¡û
>WENV181167044
OEIU01007142
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
4207
4132
-
Thr
CGT
[ENA]
¢þ
>WENV181167213
OEIU01014143
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1111
1186
+
Thr
CGT
[ENA]
¢þ
>WENV181167461
OEIU01029931
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1374
1299
-
Thr
CGT
[ENA]
¢þ
>WENV181316078
OFJS01005119
[OFJS] marine metagenome; sea ice
320
245
-
Thr
CGT
[ENA]
¢þ
>W141150037
AXAB01000013
Alphaproteobacteria
Bradyrhizobium sp. WSM2254 [AXAB]
163690
163765
+
Thr
CGT
[ENA]
¡û
>W141150136
AXAD01000008
Alphaproteobacteria
Bradyrhizobium arachidis USDA 3384 [AXAD]
196793
196868
+
Thr
CGT
[ENA]
¡û
>W141150282
AXAG01000017
Alphaproteobacteria
Bradyrhizobium japonicum USDA 38 [AXAG]
182537
182462
-
Thr
CGT
[ENA]
¡û
>W141150994
AXAS01000015
Alphaproteobacteria
Bradyrhizobium sp. Ec3.3 [AXAS]
10825
10900
+
Thr
CGT
[ENA]
¡û
>W141151037
AXAT01000011
Alphaproteobacteria
Bradyrhizobium japonicum USDA 135 [AXAT]
49708
49783
+
Thr
CGT
[ENA]
¡û
>W141151129
AXAV01000007
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AXAV]
189225
189150
-
Thr
CGT
[ENA]
¡û
>W141151210
AXAW01000039
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3259 [AXAW]
49961
49886
-
Thr
CGT
[ENA]
¡û
>W141151251
AXAX01000018
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [AXAX]
33891
33816
-
Thr
CGT
[ENA]
¡û
>W141151333
AXAZ01000027
Alphaproteobacteria
Bradyrhizobium sp. WSM1743 [AXAZ]
88280
88355
+
Thr
CGT
[ENA]
¡û
>W141151499
AXBC01000008
Alphaproteobacteria
Bradyrhizobium genosp. SA-4 SA-4 str. CB756 [AXBC]
178102
178027
-
Thr
CGT
[ENA]
¡û
>W141168814
AXVG01000002
Alphaproteobacteria
Bradyrhizobium japonicum 22 [AXVG]
92341
92266
-
Thr
CGT
[ENA]
¡û
>W08007862
ABKN01000001
Alphaproteobacteria
Afipia carboxidovorans OM5 [ABKN]
308183
308111
-
Thr
CGT
[ENA]
¡û
>W141233867
BAWE01000002
Alphaproteobacteria
Bradyrhizobium sp. DOA9 [BAWE]
1378542
1378617
+
Thr
CGT
[ENA]
¡û
>W141261740
CCAZ010000268
Alphaproteobacteria
Afipia felis [CCAZ]
4935
5010
+
Thr
CGT
[ENA]
¡û
>WENV183630744
OOGU01001415
[OOGU] marine metagenome; sea ice
3356
3281
-
Thr
CGT
[ENA]
¢þ
>WENV183636473
OOKD01005648
[OOKD] human gut metagenome; Skin biopsy
658
733
+
Thr
CGT
[ENA]
¢þ
>WENV183670886
ORJL010999209
[ORJL] groundwater metagenome; groundwater
2662
2587
-
Thr
CGT
[ENA]
¢þ
>WENV183679793
ORMF010105126
[ORMF] groundwater metagenome; groundwater
1204
1129
-
Thr
CGT
[ENA]
¢þ
>WENV183681312
ORMF010287892
[ORMF] groundwater metagenome; groundwater
657
732
+
Thr
CGT
[ENA]
¢þ
>WENV183681705
ORMF010347858
[ORMF] groundwater metagenome; groundwater
15408
15483
+
Thr
CGT
[ENA]
¢þ
>WENV183686451
ORMF011003070
[ORMF] groundwater metagenome; groundwater
3
78
+
Thr
CGT
[ENA]
¢þ
>WENV183686821
ORMF011056610
[ORMF] groundwater metagenome; groundwater
2692
2767
+
Thr
CGT
[ENA]
¢þ
>WENV183687145
ORMF011103242
[ORMF] groundwater metagenome; groundwater
10158
10083
-
Thr
CGT
[ENA]
¢þ
>WENV183687854
ORMF011199723
[ORMF] groundwater metagenome; groundwater
1289
1214
-
Thr
CGT
[ENA]
¢þ
>C181113155
CP025113
Alphaproteobacteria
Bradyrhizobium sp. SK17 [CP025113]
1422969
1423044
+
Thr
CGT
-
¡û
>C181181593
CP029603
Alphaproteobacteria
Bradyrhizobium diazoefficiens XF7 [CP029603]
683686
683611
-
Thr
CGT
-
¡û
>C181203838
LS398110
Alphaproteobacteria
Bradyrhizobium vignae [LS398110]
273271
273346
+
Thr
CGT
-
¡û
>C191019695
CP022219
Alphaproteobacteria
Bradyrhizobium guangxiense CCBAU 53363 [CP022219]
6932454
6932529
+
Thr
CGT
-
¡û
>C191019722
CP022221
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51778 [CP022221]
477776
477851
+
Thr
CGT
-
¡û
>C191071658
CP030051
Alphaproteobacteria
Bradyrhizobium guangdongense CCBAU 51649 [CP030051]
306683
306758
+
Thr
CGT
-
¡û
>C191071704
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
335941
336016
+
Thr
CGT
-
¡û
>C191092060
CP032617
Alphaproteobacteria
Bradyrhizobium diazoefficiens 110spc4 [CP032617]
534702
534627
-
Thr
CGT
-
¡û
>W1910183079
BJNK01000008
Alphaproteobacteria
Bradyrhizobium japonicum NBRC 14783 [BJNK]
28509
28434
-
Thr
CGT
[ENA]
¡û
>W1910183153
BJNL01000105
Alphaproteobacteria
Bradyrhizobium elkanii NBRC 14791 [BJNL]
11068
11143
+
Thr
CGT
[ENA]
¡û
>W1910232032
FPEJ01000001
Alphaproteobacteria
Hyphomicrobium sp. NDB2Meth4 [FPEJ]
518108
518183
+
Thr
CGT
[ENA]
¡û
>W1910598232
LAXE01000001
Alphaproteobacteria
Bradyrhizobium sp. SUTN9-2 [LAXE]
879820
879895
+
Thr
CGT
[ENA]
¡û
>W1910598992
LBJM01000034
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51787 [LBJM]
161260
161335
+
Thr
CGT
[ENA]
¡û
>W1910611543
LFJC01000003
Alphaproteobacteria
Bradyrhizobium nitroreducens TSA1 [LFJC]
942848
942923
+
Thr
CGT
[ENA]
¡û
>W1910840268
MZXW01000016
Alphaproteobacteria
Bradyrhizobium betae Opo-243 [MZXW]
177082
177007
-
Thr
CGT
[ENA]
¡û
>W1911409772
NWTE01000002
Alphaproteobacteria
Bradyrhizobium diazoefficiens Y21 [NWTE]
740520
740595
+
Thr
CGT
[ENA]
¡û
>W1911409929
NWTG01000037
Alphaproteobacteria
Bradyrhizobium sp. C9 [NWTG]
46158
46083
-
Thr
CGT
[ENA]
¡û
>W1911410001
NWTI01000007
Alphaproteobacteria
Bradyrhizobium sp. Y36 [NWTI]
142329
142404
+
Thr
CGT
[ENA]
¡û
>W1911629531
PSRR01000642
Alphaproteobacteria
Bradyrhizobium sp. Leo170 [PSRR]
1828
1753
-
Thr
CGT
[ENA]
¡û
>W1911629609
PSRT01000075
Alphaproteobacteria
Bradyrhizobium genosp. SA-3 SA-3 Rp7b [PSRT]
40969
40894
-
Thr
CGT
[ENA]
¡û
>W1911817855
QZMV01000003
Alphaproteobacteria
Bradyrhizobium sp. LVM 105 [QZMV]
45835
45760
-
Thr
CGT
[ENA]
¡û
>W1810104425
PGVG01000013
Alphaproteobacteria
Bradyrhizobium forestalis INPA54B [PGVG]
42370
42295
-
Thr
CGT
[ENA]
¡û
>C151066569
CP010313
Alphaproteobacteria
Bradyrhizobium japonicum E109 [CP010313]
554353
554278
-
Thr
CGT
[Ensembl]
¡û
>W1510973736
JGCL01000007
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
43047
42972
-
Thr
CGT
[ENA]
¡û
>W1511353623
JRPN01000018
Alphaproteobacteria
Bradyrhizobium japonicum Is-34 [JRPN]
1030314
1030389
+
Thr
CGT
[ENA]
¡û
>W1511507969
JXOF01000171
Alphaproteobacteria
Bradyrhizobium elkanii UASWS1015 [JXOF]
86673
86598
-
Thr
CGT
[ENA]
¡û
>W1511625959
LCZM01000290
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
15171
15246
+
Thr
CGT
[ENA]
¡û
>W1511706016
LGTB01000052
Alphaproteobacteria
Bradyrhizobium viridifuturi SEMIA 690 [LGTB]
11405
11480
+
Thr
CGT
[ENA]
¡û
>W1511706679
LGUJ01000002
Alphaproteobacteria
Bradyrhizobium diazoefficiens Is-1 [LGUJ]
179967
179892
-
Thr
CGT
[ENA]
¡û
>C121000499
AP012206
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AP012206]
555182
555107
-
Thr
CGT
[Ensembl]
¡û
>C121002974
CP002826
Alphaproteobacteria
Afipia carboxidovorans OM5 [CP002826]
220840
220915
+
Thr
CGT
-
¡û
>C161001020
AP014685
Alphaproteobacteria
Bradyrhizobium diazoefficiens NK6 [AP014685]
3858194
3858269
+
Thr
CGT
-
¡û
>C161017386
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
8109157
8109232
+
Thr
CGT
[Ensembl]
¡û
>C161034235
CP011360
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 [CP011360]
9029464
9029389
-
Thr
CGT
-
¡û
>C161062512
CP013949
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [CP013949]
278424
278499
+
Thr
CGT
[Ensembl]
¡û
>W121065397
AJPZ01000316
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15618 [AJPZ]
19819
19744
-
Thr
CGT
[ENA]
¡û
>W121065427
AJQA01000101
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 25435 [AJQA]
37722
37647
-
Thr
CGT
[ENA]
¡û
>W121065530
AJQC01000282
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 05525 [AJQC]
694
619
-
Thr
CGT
[ENA]
¡û
>W121065562
AJQD01000002
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 83689 [AJQD]
39678
39753
+
Thr
CGT
[ENA]
¡û
>W121065612
AJQE01000094
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 43298 [AJQE]
15349
15274
-
Thr
CGT
[ENA]
¡û
>W121065798
AJQI01000013
Alphaproteobacteria
Bradyrhizobium diazoefficiens CCBAU 41267 [AJQI]
6010
5935
-
Thr
CGT
[ENA]
¡û
>W121065855
AJQJ01000168
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 05623 [AJQJ]
34442
34367
-
Thr
CGT
[ENA]
¡û
>W121065904
AJQK01000124
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 25021 [AJQK]
44698
44623
-
Thr
CGT
[ENA]
¡û
>W121065952
AJQL01000118
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 35157 [AJQL]
12577
12502
-
Thr
CGT
[ENA]
¡û
>W121085097
AKIY01000333
Alphaproteobacteria
Bradyrhizobium sp. YR681 [AKIY]
27875
27950
+
Thr
CGT
[ENA]
¡û
>W121065225
AJPV01000462
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 05737 [AJPV]
3759
3834
+
Thr
CGT
[ENA]
¡û
>W1610514408
FMAE01000002
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
364911
364986
+
Thr
CGT
[ENA]
¡û
>W1610549155
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
4969205
4969130
-
Thr
CGT
[ENA]
¡û
>W1610550306
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
6798288
6798213
-
Thr
CGT
[ENA]
¡û
>W1610666812
LJYF01000002
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
104741
104816
+
Thr
CGT
[ENA]
¡û
>W1610666862
LJYG01000004
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
42075
42000
-
Thr
CGT
[ENA]
¡û
>W1610740105
LMQJ01000056
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
156278
156203
-
Thr
CGT
[ENA]
¡û
>W1610751797
LNCU01000120
Alphaproteobacteria
Bradyrhizobium macuxiense BR 10303 [LNCU]
171427
171502
+
Thr
CGT
[ENA]
¡û
>W1610912246
LSIC01000073
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
230632
230707
+
Thr
CGT
[ENA]
¡û
>W1610935769
LUKO01000160
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
493597
493672
+
Thr
CGT
[ENA]
¡û
>W1610949894
LVEM01000002
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
189411
189336
-
Thr
CGT
[ENA]
¡û
>W1710500098
FMAE01000002
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
364911
364986
+
Thr
CGT
[ENA]
¡û
>W1710513065
FMZW01000037
Alphaproteobacteria
Bradyrhizobium brasilense R5 [FMZW]
19916
19991
+
Thr
CGT
[ENA]
¡û
>W1710516745
FNCU01000004
Alphaproteobacteria
Bradyrhizobium sp. Rc2d [FNCU]
251473
251548
+
Thr
CGT
[ENA]
¡û
>W1710564276
FOQJ01000008
Alphaproteobacteria
Bradyrhizobium sp. cf659 [FOQJ]
112927
113002
+
Thr
CGT
[ENA]
¡û
>W1710564434
FOQM01000020
Alphaproteobacteria
Bradyrhizobium sp. Gha [FOQM]
112840
112915
+
Thr
CGT
[ENA]
¡û
>W1710571278
FOVU01000001
Alphaproteobacteria
Bradyrhizobium sp. Ghvi [FOVU]
1240607
1240682
+
Thr
CGT
[ENA]
¡û
>W1710578505
FPBQ01000001
Alphaproteobacteria
Bradyrhizobium arachidis [FPBQ]
39074
38999
-
Thr
CGT
[ENA]
¡û
>W1710652729
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
4969205
4969130
-
Thr
CGT
[ENA]
¡û
>W1710659032
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
6798288
6798213
-
Thr
CGT
[ENA]
¡û
>W1710735670
LGHL01000373
Alphaproteobacteria
Bradyrhizobium sp. NAS80.1 [LGHL]
198
123
-
Thr
CGT
[ENA]
¡û
>W1710735680
LGHM01000035
Alphaproteobacteria
Bradyrhizobium sp. AS23.2 [LGHM]
1298
1223
-
Thr
CGT
[ENA]
¡û
Select
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Representative sequence of each cluster
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