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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285420 (70 seq.)
>W1711434411
MIMZ01000009
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
477
552
+
Thr
TGT
[ENA]
¡û
>W1711434428
MIMZ01000017
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
285832
285757
-
Thr
TGT
[ENA]
¡û
>C171101797
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
2678000
2678075
+
Thr
TGT
-
¡û
>C171101809
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
3087309
3087384
+
Thr
TGT
-
¡û
>WENV180176426
OAWD01000106
[OAWD] human gut metagenome; faeces
299
374
+
Thr
TGT
[ENA]
¡û
>WENV180243461
OBDJ01023055
[OBDJ] human gut metagenome; human gut
549
474
-
Thr
TGT
[ENA]
¡û
>WENV180498680
OCAG01000876
[OCAG] human gut metagenome; faeces
12720
12645
-
Thr
TGT
[ENA]
¡û
>WENV180504707
OCAN01037499
[OCAN] human gut metagenome; faeces
99
174
+
Thr
TGT
[ENA]
¡û
>WENV181193837
OEQO01004255
[OEQO] metagenome; water of meat washing
566
491
-
Thr
TGT
[ENA]
¡û
>WENV181356861
OFMU01001759
[OFMU] human gut metagenome; human gut
70
145
+
Thr
TGT
[ENA]
¡û
>WENV181464575
OGEP01001496
[OGEP] metagenome; Human gut stool
24415
24340
-
Thr
TGT
[ENA]
¡û
>WENV181621435
OGMF01005768
[OGMF] metagenome; Human gut stool
146
71
-
Thr
TGT
[ENA]
¡û
>WENV181711276
OGPO01026280
[OGPO] human gut metagenome; faeces
788
863
+
Thr
TGT
[ENA]
¡û
>WENV181734863
OGQF01010760
[OGQF] human gut metagenome; faeces
2044
1969
-
Thr
TGT
[ENA]
¡û
>WENV182403185
OIET01001236
[OIET] human gut metagenome; human gut
12816
12741
-
Thr
TGT
[ENA]
¡û
>WENV182405361
OIEV01003504
[OIEV] human gut metagenome; human gut
476
551
+
Thr
TGT
[ENA]
¡û
>WENV183242170
OLRB01006489
[OLRB] human gut metagenome; faeces
250
325
+
Thr
TGT
[ENA]
¡û
>WENV170005558
AMCI01007558
[AMCI] gut metagenome; fecal sample from gut
152
227
+
Thr
TGT
[ENA]
¡û
>WENV170839959
MDSZ01195582
[MDSZ] marine metagenome; seawater
80
5
-
Thr
TGT
[ENA]
¡û
>W09111318
ABWP01000084
Bacillota
Peptacetobacter hiranonis DSM 13275 [ABWP]
12380
12455
+
Thr
TGT
[ENA]
¡û
>W1910585014
JYGE01000005
Bacillota
Peptostreptococcus russellii RT-10B [JYGE]
1120
1045
-
Thr
TGT
[ENA]
¡û
>W1910585027
JYGE01000006
Bacillota
Peptostreptococcus russellii RT-10B [JYGE]
26734
26659
-
Thr
TGT
[ENA]
¡û
>W1910585046
JYGE01000006
Bacillota
Peptostreptococcus russellii RT-10B [JYGE]
24955
24880
-
Thr
TGT
[ENA]
¡û
>W1810609753
QGUD01000004
Bacillota
Eubacterium limosum 8486cho [QGUD]
393687
393612
-
Thr
TGT
[ENA]
¡û
>W1810871704
QUDF01000002
Bacillota
Eubacterium sp. AM05-23 [QUDF]
10
85
+
Thr
TGT
[ENA]
¡û
>W1810871707
QUDF01000002
Bacillota
Eubacterium sp. AM05-23 [QUDF]
449
524
+
Thr
TGT
[ENA]
¡û
>W1810875747
QUGE01000021
Bacillota
Peptoclostridium sp. AF21-18 [QUGE]
20901
20826
-
Thr
TGT
[ENA]
¡û
>W2010253743
CABJAI020000004
Bacillota
Eubacterium callanderi [CABJAI]
344509
344434
-
Thr
TGT
[ENA]
¡û
>W2010253750
CABJAI020000007
Bacillota
Eubacterium callanderi [CABJAI]
212995
212920
-
Thr
TGT
[ENA]
¡û
>W2010258706
CABJDW020000002
Bacillota
Eubacterium limosum [CABJDW]
10
85
+
Thr
TGT
[ENA]
¡û
>W2010258709
CABJDW020000002
Bacillota
Eubacterium limosum [CABJDW]
449
524
+
Thr
TGT
[ENA]
¡û
>W2010263998
CABKOC020000002
Bacillota
Peptostreptococcaceae bacterium [CABKOC]
45448
45523
+
Thr
TGT
[ENA]
¡û
>W2010764517
JYGE01000005
Bacillota
Peptostreptococcus russellii RT-10B [JYGE]
1120
1045
-
Thr
TGT
[ENA]
¡û
>W2010764530
JYGE01000006
Bacillota
Peptostreptococcus russellii RT-10B [JYGE]
26734
26659
-
Thr
TGT
[ENA]
¡û
>W2010764549
JYGE01000006
Bacillota
Peptostreptococcus russellii RT-10B [JYGE]
24955
24880
-
Thr
TGT
[ENA]
¡û
>W2011560520
SGJB01000009
Bacillota
Peptacetobacter hominis ZHW00191 [SGJB]
63386
63311
-
Thr
TGT
[ENA]
¡û
>W2011560521
SGJB01000010
Bacillota
Peptacetobacter hominis ZHW00191 [SGJB]
93744
93669
-
Thr
TGT
[ENA]
¡û
>W2011560524
SGJB01000030
Bacillota
Peptacetobacter hominis ZHW00191 [SGJB]
1928
1853
-
Thr
TGT
[ENA]
¡û
>W2011560554
SGJB01000034
Bacillota
Peptacetobacter hominis ZHW00191 [SGJB]
534
459
-
Thr
TGT
[ENA]
¡û
>W2012154823
VUMP01000006
Bacillota
Eubacterium sp. BL-380-WT-2B [VUMP]
437626
437551
-
Thr
TGT
[ENA]
¡û
>W2110076088
CACRTR010000015
Bacillota
Eubacterium limosum [CACRTR]
609
684
+
Thr
TGT
[ENA]
¡û
>W2110076096
CACRTR010000023
Bacillota
Eubacterium limosum [CACRTR]
962803
962728
-
Thr
TGT
[ENA]
¡û
>C211233251
CP066811
Bacillota
Peptacetobacter hiranonis DGF055142 [CP066811]
45029
45104
+
Thr
TGT
-
¡û
>C211233273
CP066811
Bacillota
Peptacetobacter hiranonis DGF055142 [CP066811]
47008
47083
+
Thr
TGT
-
¡û
>C211233297
CP066811
Bacillota
Peptacetobacter hiranonis DGF055142 [CP066811]
2506261
2506186
-
Thr
TGT
-
¡û
>C211233304
CP066811
Bacillota
Peptacetobacter hiranonis DGF055142 [CP066811]
2432312
2432237
-
Thr
TGT
-
¡û
>W2110728961
JAJCLO010000005
Bacillota
Eubacterium limosum DFI.6.107 [JAJCLO]
251444
251369
-
Thr
TGT
[ENA]
¡û
>W2110728995
JAJCLO010000087
Bacillota
Eubacterium limosum DFI.6.107 [JAJCLO]
154
79
-
Thr
TGT
[ENA]
¡û
>C231384422
CP097376
Bacillota
Eubacterium limosum B2 [CP097376]
3952376
3952451
+
Thr
TGT
-
¡û
>C231384434
CP097376
Bacillota
Eubacterium limosum B2 [CP097376]
4361685
4361760
+
Thr
TGT
-
¡û
>C241044893
CP036523
Bacillota
Peptacetobacter hiranonis DSM 13275 [CP036523]
169122
169197
+
Thr
TGT
-
¡û
>C241044900
CP036523
Bacillota
Peptacetobacter hiranonis DSM 13275 [CP036523]
258347
258422
+
Thr
TGT
-
¡û
>C241044942
CP036523
Bacillota
Peptacetobacter hiranonis DSM 13275 [CP036523]
95755
95680
-
Thr
TGT
-
¡û
>C241044964
CP036523
Bacillota
Peptacetobacter hiranonis DSM 13275 [CP036523]
93770
93695
-
Thr
TGT
-
¡û
>W2310010255
BMAX01000001
Bacillota
[Clostridium] methoxybenzovorans ATCC 700855 [BMAX]
1157512
1157437
-
Thr
TGT
[ENA]
¡û
>W2310010288
BMAX01000005
Bacillota
[Clostridium] methoxybenzovorans ATCC 700855 [BMAX]
500
575
+
Thr
TGT
[ENA]
¡û
>C11108816
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
949398
949473
+
Thr
TGT
[Ensembl]
¡û
>C11108848
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
2689027
2688952
-
Thr
TGT
[Ensembl]
¡û
>W1511480172
JWIS01000016
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
80622
80547
-
Thr
TGT
[ENA]
¡û
>W1511480183
JWIS01000020
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
93330
93255
-
Thr
TGT
[ENA]
¡û
>C161037809
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3248226
3248151
-
Thr
TGT
[Ensembl]
¡û
>C161037812
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
3247787
3247712
-
Thr
TGT
[Ensembl]
¡û
>W1710533831
FNRK01000065
Bacillota
Eubacterium aggregans [FNRK]
366
291
-
Thr
TGT
[ENA]
¡û
>W1710571975
FOWI01000006
Bacillota
Eubacterium callanderi [FOWI]
805
880
+
Thr
TGT
[ENA]
¡û
>W1710571987
FOWI01000008
Bacillota
Eubacterium callanderi [FOWI]
805
880
+
Thr
TGT
[ENA]
¡û
>W1710582806
FQUG01000018
Bacillota
Schwartzia succinivorans DSM 10502 [FQUG]
1328
1253
-
Thr
TGT
[ENA]
¡û
>W1710586093
FQWX01000004
Bacillota
Asaccharospora irregularis DSM 2635 [FQWX]
41150
41225
+
Thr
TGT
[ENA]
¡û
>W1710586099
FQWX01000063
Bacillota
Asaccharospora irregularis DSM 2635 [FQWX]
175
250
+
Thr
TGT
[ENA]
¡û
>W1710591283
FRBP01000004
Bacillota
Eubacterium callanderi [FRBP]
480
555
+
Thr
TGT
[ENA]
¡û
>W1710591308
FRBP01000012
Bacillota
Eubacterium callanderi [FRBP]
172865
172790
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK