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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285475 (39 seq.)
>W1711580539
MNTC01000119
Bacillota
Firmicutes bacterium CAG:552_39_19 [MNTC]
113139
113214
+
Lys
TTT
[ENA]
¡û
>WENV180243721
OBDJ01075800
[OBDJ] human gut metagenome; human gut
105
178
+
Lys
TTT
[ENA]
¡û
>WENV180300230
OBJD01029215
[OBJD] human gut metagenome; human gut
163
238
+
Lys
TTT
[ENA]
¡û
>WENV181203165
OERT01008048
[OERT] metagenome; water of meat washing
278
350
+
Lys
TTT
[ENA]
¡û
>WENV181230707
OFEK01002492
[OFEK] activated sludge metagenome; Anaerobic digester
8796
8871
+
Lys
TTT
[ENA]
¡û
>WENV181464281
OGEP01000447
[OGEP] metagenome; Human gut stool
4576
4502
-
Lys
TTT
[ENA]
¡û
>WENV181711267
OGPO01026280
[OGPO] human gut metagenome; faeces
2
75
+
Lys
TTT
[ENA]
¡û
>WENV181734680
OGQF01004887
[OGQF] human gut metagenome; faeces
5190
5264
+
Lys
TTT
[ENA]
¡û
>WENV182069804
OHFH01026212
[OHFH] human gut metagenome; feces
443
518
+
Lys
TTT
[ENA]
¡û
>WENV182186978
OHOJ01019669
[OHOJ] human gut metagenome; feces
786
711
-
Lys
TTT
[ENA]
¡û
>WENV182398199
OIEN01000711
[OIEN] human gut metagenome; human gut
287
212
-
Lys
TTT
[ENA]
¡û
>WENV182509545
OIWH01000868
[OIWH] human gut metagenome; faeces
45
120
+
Lys
TTT
[ENA]
¡û
>WENV183242175
OLRB01006489
[OLRB] human gut metagenome; faeces
729
804
+
Lys
TTT
[ENA]
¡û
>WENV183242182
OLRB01006489
[OLRB] human gut metagenome; faeces
1368
1441
+
Lys
TTT
[ENA]
¡û
>WENV183710190
PDWI01041406
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3858
3933
+
Lys
TTT
[ENA]
¡û
>WENV183718776
PDWJ01006522
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5816
5891
+
Lys
TTT
[ENA]
¡û
>WENV183719870
PDWJ01021861
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1459
1534
+
Lys
TTT
[ENA]
¡û
>WENV170005596
AMCI01008248
[AMCI] gut metagenome; fecal sample from gut
39
113
+
Lys
TTT
[ENA]
¡û
>W09111315
ABWP01000084
Bacillota
Peptacetobacter hiranonis DSM 13275 [ABWP]
12109
12184
+
Lys
TTT
[ENA]
¡û
>W09111325
ABWP01000101
Bacillota
Peptacetobacter hiranonis DSM 13275 [ABWP]
1
73
+
Lys
TTT
[ENA]
¡û
>W1910585015
JYGE01000005
Bacillota
Peptostreptococcus russellii RT-10B [JYGE]
1023
951
-
Lys
TTT
[ENA]
¡û
>W1810875744
QUGE01000021
Bacillota
Peptoclostridium sp. AF21-18 [QUGE]
21172
21097
-
Lys
TTT
[ENA]
¡û
>W1810875766
QUGE01000061
Bacillota
Peptoclostridium sp. AF21-18 [QUGE]
505
431
-
Lys
TTT
[ENA]
¡û
>W2010263995
CABKOC020000002
Bacillota
Peptostreptococcaceae bacterium [CABKOC]
45177
45252
+
Lys
TTT
[ENA]
¡û
>W2010264009
CABKOC020000010
Bacillota
Peptostreptococcaceae bacterium [CABKOC]
1
73
+
Lys
TTT
[ENA]
¡û
>W2010602237
JABGBX010000004
Bacillota
Peptostreptococcus russellii HBUAS54107 [JABGBX]
917
844
-
Lys
TTT
[ENA]
¡û
>W2010764518
JYGE01000005
Bacillota
Peptostreptococcus russellii RT-10B [JYGE]
1023
951
-
Lys
TTT
[ENA]
¡û
>C211233264
CP066811
Bacillota
Peptacetobacter hiranonis DGF055142 [CP066811]
46222
46295
+
Lys
TTT
-
¡û
>C211233278
CP066811
Bacillota
Peptacetobacter hiranonis DGF055142 [CP066811]
47486
47561
+
Lys
TTT
-
¡û
>C211233285
CP066811
Bacillota
Peptacetobacter hiranonis DGF055142 [CP066811]
48124
48197
+
Lys
TTT
-
¡û
>C211233294
CP066811
Bacillota
Peptacetobacter hiranonis DGF055142 [CP066811]
2506532
2506457
-
Lys
TTT
-
¡û
>C211233306
CP066811
Bacillota
Peptacetobacter hiranonis DGF055142 [CP066811]
2432141
2432067
-
Lys
TTT
-
¡û
>C231555422
CP114052
Bacillota
Peptostreptococcus sp. CBA3647 [CP114052]
1783250
1783176
-
Lys
TTT
-
¡û
>C241044890
CP036523
Bacillota
Peptacetobacter hiranonis DSM 13275 [CP036523]
168851
168926
+
Lys
TTT
-
¡û
>C241044902
CP036523
Bacillota
Peptacetobacter hiranonis DSM 13275 [CP036523]
258517
258591
+
Lys
TTT
-
¡û
>C241044955
CP036523
Bacillota
Peptacetobacter hiranonis DSM 13275 [CP036523]
94557
94484
-
Lys
TTT
-
¡û
>C241044969
CP036523
Bacillota
Peptacetobacter hiranonis DSM 13275 [CP036523]
93291
93216
-
Lys
TTT
-
¡û
>C241044976
CP036523
Bacillota
Peptacetobacter hiranonis DSM 13275 [CP036523]
92652
92579
-
Lys
TTT
-
¡û
>W1710547733
FODF01000016
Bacillota
Peptostreptococcus russellii [FODF]
24491
24564
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK