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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285535 (43 seq.)
>W1711383786
MECU01000010
Gammaproteobacteria
Shigella sp. FC130 [MECU]
65375
65450
+
Lys
CTT
[ENA]
¡û
>W1711430108
MIIW01000026
Gammaproteobacteria
Shigella sp. FC1655 [MIIW]
65180
65255
+
Lys
CTT
[ENA]
¡û
>W1711430329
MIIZ01000774
Gammaproteobacteria
Shigella sp. FC1967 [MIIZ]
1763
1838
+
Lys
CTT
[ENA]
¡û
>W1711608792
MOSG01000067
Gammaproteobacteria
Proteus sp. H24 [MOSG]
7374
7449
+
Lys
CTT
[ENA]
¡û
>W1711738876
MUBK01000040
Gammaproteobacteria
Xenorhabdus beddingii [MUBK]
12133
12208
+
Lys
CTT
[ENA]
¡û
>W1712019997
NEYX01000001
Gammaproteobacteria
Proteus mirabilis [NEYX]
262652
262577
-
Lys
CTT
[ENA]
¡û
>W1712109032
NJFA01000001
Gammaproteobacteria
Proteus mirabilis [NJFA]
3232501
3232426
-
Lys
CTT
[ENA]
¡û
>C171046469
CP016176
Gammaproteobacteria
Xenorhabdus hominickii ANU1 [CP016176]
544880
544805
-
Lys
CTT
-
¡û
>W141148104
AWXP01000008
Gammaproteobacteria
Proteus hauseri ZMd44 [AWXP]
557404
557329
-
Lys
CTT
[ENA]
¡û
>WENV182521626
OIWQ01022602
[OIWQ] human gut metagenome; faeces
109
34
-
Lys
CTT
[ENA]
¢þ
>WENV182595863
OJIY01000055
[OJIY] metagenome; faeces
91970
92045
+
Lys
CTT
[ENA]
¢þ
>WENV183772309
PPYF01016724
[PPYF] human gut metagenome; stool from patient with Crohn's disease
10322
10397
+
Lys
CTT
[ENA]
¢þ
>WENV183788541
PPYF01370157
[PPYF] human gut metagenome; stool from patient with Crohn's disease
157002
157077
+
Lys
CTT
[ENA]
¢þ
>C181092320
CP023965
Gammaproteobacteria
Proteus vulgaris FDAARGOS_366 [CP023965]
2446774
2446699
-
Lys
CTT
-
¡û
>C181217534
LS483498
Gammaproteobacteria
Morganella morganii NCTC12028 [LS483498]
2356402
2356477
+
Lys
CTT
-
¡û
>C191099429
CP033056
Gammaproteobacteria
Morganella morganii L241 [CP033056]
2226405
2226480
+
Lys
CTT
-
¡û
>C191110549
CP033736
Gammaproteobacteria
Proteus vulgaris FDAARGOS_556 [CP033736]
1962938
1963013
+
Lys
CTT
-
¡û
>W09110506
ABVP01000017
Gammaproteobacteria
Proteus penneri ATCC 35198 [ABVP]
60303
60378
+
Lys
CTT
[ENA]
¡û
>W141804916
JPIX01000001
Gammaproteobacteria
Proteus vulgaris [JPIX]
406369
406294
-
Lys
CTT
[ENA]
¡û
>W1910857284
NBUT01000035
Gammaproteobacteria
Proteus vulgaris CICC [NBUT]
222832
222907
+
Lys
CTT
[ENA]
¡û
>W1910857405
NBVR01000031
Gammaproteobacteria
Proteus alimentorum 08MAS0041 [NBVR]
631612
631687
+
Lys
CTT
[ENA]
¡û
>W1910905486
NGVR01000032
Gammaproteobacteria
Proteus columbae 08MAS2615 [NGVR]
264831
264906
+
Lys
CTT
[ENA]
¡û
>W1910918890
NIBT01000022
Gammaproteobacteria
Xenorhabdus ehlersii DSM 16337 [NIBT]
33120
33195
+
Lys
CTT
[ENA]
¡û
>W1910939859
NJAI01000004
Gammaproteobacteria
Xenorhabdus hominickii DSM 17903 [NJAI]
82574
82649
+
Lys
CTT
[ENA]
¡û
>W1911580962
PENT01000021
Gammaproteobacteria
Proteus genomosp. 6 6 str. ATCC 51471 [PENT]
16586
16511
-
Lys
CTT
[ENA]
¡û
>W1911580999
PENU01000004
Gammaproteobacteria
Proteus terrae 5 str. ATCC 51470 [PENU]
451663
451738
+
Lys
CTT
[ENA]
¡û
>W1911581063
PENV01000002
Gammaproteobacteria
Proteus genomosp. 4 4 str. ATCC 51469 [PENV]
303425
303500
+
Lys
CTT
[ENA]
¡û
>W1810006168
BFCJ01000037
Gammaproteobacteria
Morganella morganii MH16-367M [BFCJ]
5469
5394
-
Lys
CTT
[ENA]
¡û
>W1810080881
PENS01000005
Gammaproteobacteria
Proteus terrae LMG 28659 [PENS]
52929
52854
-
Lys
CTT
[ENA]
¡û
>W1810080969
PENW01000010
Gammaproteobacteria
Proteus cibi FJ2001126-3 [PENW]
77228
77303
+
Lys
CTT
[ENA]
¡û
>W1810081027
PENX01000001
Gammaproteobacteria
Proteus sp. CA142267 [PENX]
558473
558548
+
Lys
CTT
[ENA]
¡û
>W1810081180
PENY01000044
Gammaproteobacteria
Proteus sp. TJ1640 [PENY]
10819
10744
-
Lys
CTT
[ENA]
¡û
>W1810081181
PENZ01000001
Gammaproteobacteria
Proteus faecis TJ1636 [PENZ]
37368
37443
+
Lys
CTT
[ENA]
¡û
>W1810107072
PGWT01000001
Gammaproteobacteria
Proteus terrae JCM 30699 [PGWT]
220562
220637
+
Lys
CTT
[ENA]
¡û
>W1810107888
PHFJ01000001
Gammaproteobacteria
Proteus penneri ATCC 33519 [PHFJ]
273329
273254
-
Lys
CTT
[ENA]
¡û
>W1810116016
PHNN01000001
Gammaproteobacteria
Proteus vulgaris KCTC 2579 [PHNN]
395512
395437
-
Lys
CTT
[ENA]
¡û
>W1810583159
QEXA01000003
Gammaproteobacteria
Proteus faecis 08MAS1600 [QEXA]
95760
95835
+
Lys
CTT
[ENA]
¡û
>W1810762137
QPMG01000001
Gammaproteobacteria
Proteus sp. CA142267 [QPMG]
558473
558548
+
Lys
CTT
[ENA]
¡û
>C151076902
CP011104
Gammaproteobacteria
Photorhabdus thracensis DSM 15199 [CP011104]
4847958
4847883
-
Lys
CTT
[Ensembl]
¡û
>W1510651141
CVRY01000002
Gammaproteobacteria
Proteus penneri CSUR P1867 [CVRY]
5230
5305
+
Lys
CTT
[ENA]
¡û
>W1510651204
CVRZ01000002
Gammaproteobacteria
Proteus vulgaris CSUR P1868 [CVRZ]
12169
12244
+
Lys
CTT
[ENA]
¡û
>W1511565707
LAGC01000005
Gammaproteobacteria
Morganella morganii 8066 [LAGC]
13043
13118
+
Lys
CTT
[ENA]
¡û
>W1610994228
LXEN01000018
Gammaproteobacteria
Proteus myxofaciens ATCC 19692 [LXEN]
3575
3650
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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