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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285586 (112 seq.)
>W1710995818
LQAQ01000098
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
199150
199225
+
Gly
GCC
[ENA]
¡û
>W1710995820
LQAQ01000098
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
199352
199427
+
Gly
GCC
[ENA]
¡û
>W1710995822
LQAQ01000098
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
199618
199693
+
Gly
GCC
[ENA]
¡û
>W131228637
AUGC01000007
Bacteroidota
Thermonema rossianum DSM 10300 [AUGC]
50862
50935
+
Gly
GCC
[ENA]
¡û
>W1711385091
MEDR01000172
Bacteroidota
Chryseobacterium sp. SCN 40-13 [MEDR]
339
414
+
Gly
GCC
[ENA]
¡û
>W1711503299
MKTM01000008
Bacteroidota
Flavobacterium sp. 40-81 [MKTM]
119224
119299
+
Gly
GCC
[ENA]
¡û
>W1711621193
MPCW01000001
Bacteroidota
Flavobacterium sp. MedPE-SWcel [MPCW]
208381
208308
-
Gly
GCC
[ENA]
¡û
>W1711738007
MUAW01000003
Bacteroidota
Flavobacterium columnare [MUAW]
329357
329284
-
Gly
GCC
[ENA]
¡û
>W1711738010
MUAW01000003
Bacteroidota
Flavobacterium columnare [MUAW]
328951
328878
-
Gly
GCC
[ENA]
¡û
>C171016675
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
2856804
2856879
+
Gly
GCC
-
¡û
>W131000002
ADDA01000001
Bacteroidota
Capnocytophaga granulosa ATCC 51502 [ADDA]
23589
23516
-
Gly
GCC
[ENA]
¡û
>W131046238
AMSG01000018
Bacteroidota
Galbibacter marinus ck-I2-15 [AMSG]
39138
39211
+
Gly
GCC
[ENA]
¡û
>W141007823
AGYB01000006
Bacteroidota
Bergeyella zoohelcum CCUG 30536 [AGYB]
144888
144813
-
Gly
GCC
[ENA]
¡û
>WENV180103398
OAPA01028664
[OAPA] marine metagenome; ENVO:00002010
513
440
-
Gly
GCC
[ENA]
¢þ
>WENV180697351
ODDE01000052
[ODDE] human metagenome; G_DNA_Supragingival plaque
30317
30244
-
Gly
GCC
[ENA]
¢þ
>WENV180698129
ODDE01041755
[ODDE] human metagenome; G_DNA_Supragingival plaque
273
198
-
Gly
GCC
[ENA]
¢þ
>WENV180717775
ODGE01001893
[ODGE] human metagenome; G_DNA_Buccal mucosa
3747
3822
+
Gly
GCC
[ENA]
¢þ
>WENV180718040
ODGE01040208
[ODGE] human metagenome; G_DNA_Buccal mucosa
103
176
+
Gly
GCC
[ENA]
¢þ
>WENV180726131
ODGS01037130
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
81
8
-
Gly
GCC
[ENA]
¢þ
>WENV180726773
ODGU01000469
[ODGU] human metagenome; G_DNA_Supragingival plaque
4672
4599
-
Gly
GCC
[ENA]
¢þ
>WENV180726828
ODGU01000659
[ODGU] human metagenome; G_DNA_Supragingival plaque
22506
22433
-
Gly
GCC
[ENA]
¢þ
>WENV180727042
ODGU01001709
[ODGU] human metagenome; G_DNA_Supragingival plaque
10155
10082
-
Gly
GCC
[ENA]
¢þ
>WENV180727394
ODGU01004939
[ODGU] human metagenome; G_DNA_Supragingival plaque
4963
4890
-
Gly
GCC
[ENA]
¢þ
>WENV180734466
ODGZ01009608
[ODGZ] human metagenome; G_DNA_Supragingival plaque
2666
2741
+
Gly
GCC
[ENA]
¢þ
>WENV180736367
ODHB01031868
[ODHB] human metagenome; G_DNA_Supragingival plaque
604
531
-
Gly
GCC
[ENA]
¢þ
>WENV180765090
ODIB01018669
[ODIB] human metagenome; G_DNA_Supragingival plaque
431
358
-
Gly
GCC
[ENA]
¢þ
>WENV180774275
ODIJ01015244
[ODIJ] human metagenome; G_DNA_Tongue dorsum
172
97
-
Gly
GCC
[ENA]
¢þ
>WENV180783077
ODIQ01001316
[ODIQ] human metagenome; G_DNA_Tongue dorsum
129
204
+
Gly
GCC
[ENA]
¢þ
>WENV180806974
ODJI01000214
[ODJI] human metagenome; G_DNA_Tongue dorsum
21652
21725
+
Gly
GCC
[ENA]
¢þ
>WENV180816469
ODJP01016278
[ODJP] human metagenome; G_DNA_Tongue dorsum
468
395
-
Gly
GCC
[ENA]
¢þ
>WENV180829875
ODKB01000020
[ODKB] human metagenome; G_DNA_Tongue dorsum
95529
95454
-
Gly
GCC
[ENA]
¢þ
>WENV180852839
ODKW01007623
[ODKW] human metagenome; G_DNA_Tongue dorsum
264
189
-
Gly
GCC
[ENA]
¢þ
>WENV180858335
ODLC01003496
[ODLC] human metagenome; G_DNA_Tongue dorsum
2365
2290
-
Gly
GCC
[ENA]
¢þ
>WENV180863734
ODLH01001815
[ODLH] human metagenome; G_DNA_Tongue dorsum
5145
5218
+
Gly
GCC
[ENA]
¢þ
>WENV180891655
ODMQ01003923
[ODMQ] human metagenome; G_DNA_Supragingival plaque
148
75
-
Gly
GCC
[ENA]
¢þ
>WENV180930560
ODTP01000082
[ODTP] human metagenome; G_DNA_Tongue dorsum
75519
75592
+
Gly
GCC
[ENA]
¢þ
>WENV180931605
ODTP01006667
[ODTP] human metagenome; G_DNA_Tongue dorsum
778
705
-
Gly
GCC
[ENA]
¢þ
>WENV180934335
ODTR01124108
[ODTR] human metagenome; G_DNA_Supragingival plaque
186
113
-
Gly
GCC
[ENA]
¢þ
>WENV180934900
ODTS01008344
[ODTS] human metagenome; G_DNA_Subgingival plaque
238
311
+
Gly
GCC
[ENA]
¢þ
>WENV180948337
ODUG01000811
[ODUG] human metagenome; G_DNA_Tongue dorsum
1267
1194
-
Gly
GCC
[ENA]
¢þ
>WENV180958139
ODUL01000602
[ODUL] human metagenome; G_DNA_Supragingival plaque
13429
13356
-
Gly
GCC
[ENA]
¢þ
>WENV180976129
ODUY01048426
[ODUY] human metagenome; G_DNA_Supragingival plaque
455
528
+
Gly
GCC
[ENA]
¢þ
>WENV180986498
ODVK01000033
[ODVK] human metagenome; G_DNA_Supragingival plaque
53973
54046
+
Gly
GCC
[ENA]
¢þ
>WENV180986615
ODVK01000176
[ODVK] human metagenome; G_DNA_Supragingival plaque
5835
5762
-
Gly
GCC
[ENA]
¢þ
>WENV180986654
ODVK01000274
[ODVK] human metagenome; G_DNA_Supragingival plaque
9084
9157
+
Gly
GCC
[ENA]
¢þ
>WENV180986779
ODVK01000797
[ODVK] human metagenome; G_DNA_Supragingival plaque
8733
8806
+
Gly
GCC
[ENA]
¢þ
>WENV180987086
ODVK01004543
[ODVK] human metagenome; G_DNA_Supragingival plaque
950
1025
+
Gly
GCC
[ENA]
¢þ
>WENV181005859
ODWA01000067
[ODWA] human metagenome; G_DNA_Buccal mucosa
6337
6264
-
Gly
GCC
[ENA]
¢þ
>WENV181006515
ODWA01029496
[ODWA] human metagenome; G_DNA_Buccal mucosa
5
78
+
Gly
GCC
[ENA]
¢þ
>WENV181044123
ODXV01003265
[ODXV] human metagenome; G_DNA_Tongue dorsum
5981
6054
+
Gly
GCC
[ENA]
¢þ
>WENV181057244
ODYL01000002
[ODYL] human metagenome; G_DNA_Tongue dorsum
90109
90034
-
Gly
GCC
[ENA]
¢þ
>WENV181059271
ODYM01000296
[ODYM] human metagenome; G_DNA_Tongue dorsum
3905
3832
-
Gly
GCC
[ENA]
¢þ
>WENV181060402
ODYM01163736
[ODYM] human metagenome; G_DNA_Tongue dorsum
154
81
-
Gly
GCC
[ENA]
¢þ
>WENV181066967
ODZI01004094
[ODZI] human metagenome; G_DNA_Supragingival plaque
1250
1325
+
Gly
GCC
[ENA]
¢þ
>WENV181075219
OEAO01090024
[OEAO] human metagenome; G_DNA_Tongue dorsum
159
234
+
Gly
GCC
[ENA]
¢þ
>WENV181082748
OEAV01000441
[OEAV] human metagenome; G_DNA_Supragingival plaque
22530
22457
-
Gly
GCC
[ENA]
¢þ
>WENV181083083
OEAV01002266
[OEAV] human metagenome; G_DNA_Supragingival plaque
4038
4111
+
Gly
GCC
[ENA]
¢þ
>WENV181083797
OEAV01024694
[OEAV] human metagenome; G_DNA_Supragingival plaque
1045
1118
+
Gly
GCC
[ENA]
¢þ
>WENV181084514
OEAV01280516
[OEAV] human metagenome; G_DNA_Supragingival plaque
1
74
+
Gly
GCC
[ENA]
¢þ
>WENV181084834
OEAX01000178
[OEAX] human metagenome; G_DNA_Tongue dorsum
21125
21198
+
Gly
GCC
[ENA]
¢þ
>WENV181085147
OEAX01001961
[OEAX] human metagenome; G_DNA_Tongue dorsum
894
821
-
Gly
GCC
[ENA]
¢þ
>WENV181085316
OEAX01005466
[OEAX] human metagenome; G_DNA_Tongue dorsum
3378
3453
+
Gly
GCC
[ENA]
¢þ
>WENV181087701
OEAY01132966
[OEAY] human metagenome; G_DNA_Tongue dorsum
184
111
-
Gly
GCC
[ENA]
¢þ
>WENV181095493
OEBY01009975
[OEBY] human metagenome; G_DNA_Tongue dorsum
2961
3034
+
Gly
GCC
[ENA]
¢þ
>WENV181100958
OECM01000055
[OECM] human metagenome; G_DNA_Buccal mucosa
2226
2299
+
Gly
GCC
[ENA]
¢þ
>WENV181113249
OEEL01016898
[OEEL] human metagenome; G_DNA_Tongue dorsum
1482
1557
+
Gly
GCC
[ENA]
¢þ
>WENV181119728
OEFJ01000024
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
66707
66632
-
Gly
GCC
[ENA]
¢þ
>WENV181135953
OEGI01000116
[OEGI] human metagenome; G_DNA_Supragingival plaque
42955
43028
+
Gly
GCC
[ENA]
¢þ
>WENV181136012
OEGI01000232
[OEGI] human metagenome; G_DNA_Supragingival plaque
22368
22295
-
Gly
GCC
[ENA]
¢þ
>WENV181137176
OEGJ01000587
[OEGJ] human metagenome; G_DNA_Supragingival plaque
9562
9489
-
Gly
GCC
[ENA]
¢þ
>WENV181137246
OEGJ01001073
[OEGJ] human metagenome; G_DNA_Supragingival plaque
8900
8827
-
Gly
GCC
[ENA]
¢þ
>WENV181137287
OEGJ01001426
[OEGJ] human metagenome; G_DNA_Supragingival plaque
1271
1198
-
Gly
GCC
[ENA]
¢þ
>WENV181143292
OEHM01000372
[OEHM] human metagenome; G_DNA_Supragingival plaque
2347
2420
+
Gly
GCC
[ENA]
¢þ
>WENV181145984
OEHQ01000377
[OEHQ] human metagenome; G_DNA_Supragingival plaque
2602
2675
+
Gly
GCC
[ENA]
¢þ
>WENV181149964
OEHW01000133
[OEHW] human metagenome; G_DNA_Tongue dorsum
21894
21967
+
Gly
GCC
[ENA]
¢þ
>WENV181158187
OEIH01000004
[OEIH] human metagenome; G_DNA_Supragingival plaque
259821
259896
+
Gly
GCC
[ENA]
¢þ
>WENV181160674
OEIK01023460
[OEIK] human metagenome; G_DNA_Supragingival plaque
303
376
+
Gly
GCC
[ENA]
¢þ
>WENV181181193
OEJU01009006
[OEJU] human metagenome; G_DNA_Supragingival plaque
807
732
-
Gly
GCC
[ENA]
¢þ
>WENV181402032
OFTY01000046
[OFTY] sludge metagenome; sludge
24149
24076
-
Gly
GCC
[ENA]
¢þ
>W141143698
AWSR01000001
Bacteroidota
Capnocytophaga sp. oral taxon 863 oral taxon 863 str. F0517 [AWSR]
81718
81791
+
Gly
GCC
[ENA]
¡û
>W141188480
AYMS01000051
Bacteroidota
Myroides odoratimimus H1bi [AYMS]
101046
101121
+
Gly
GCC
[ENA]
¡û
>WENV183509435
OMHI01002515
[OMHI] human oral metagenome; human oral
57
130
+
Gly
GCC
[ENA]
¢þ
>WENV170192969
CEPG01040038
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
496
421
-
Gly
GCC
[ENA]
¢þ
>WENV170444703
CEUX01206797
[CEUX] marine metagenome genome assembly TARA_123_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1577
1504
-
Gly
GCC
[ENA]
¢þ
>WENV170608456
FUWD010958404
[FUWD] metagenome; unknown
4
77
+
Gly
GCC
[ENA]
¢þ
>C181063855
CP022386
Bacteroidota
Capnocytophaga gingivalis H1496 [CP022386]
2147480
2147407
-
Gly
GCC
-
¡û
>C181067223
CP022515
Bacteroidota
Arenibacter algicola SMS7 [CP022515]
2836544
2836469
-
Gly
GCC
-
¡û
>C181196548
CP031188
Bacteroidota
Flavobacterium arcticum SM1502 [CP031188]
1772950
1773023
+
Gly
GCC
-
¡û
>C181202226
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
3588188
3588115
-
Gly
GCC
-
¡û
>C181202228
CP031557
Bacteroidota
Flavobacterium psychrotrophum CJ74 [CP031557]
3587973
3587900
-
Gly
GCC
-
¡û
>C181224968
LT906449
Bacteroidota
Capnocytophaga haemolytica NCTC12947 [LT906449]
1063987
1063914
-
Gly
GCC
-
¡û
>C191134757
CP035107
Bacteroidota
Ornithobacterium rhinotracheale FARPER-174b [CP035107]
324151
324224
+
Gly
GCC
-
¡û
>W09128278
ACLQ01000011
Bacteroidota
Capnocytophaga gingivalis ATCC 33624 [ACLQ]
29114
29187
+
Gly
GCC
[ENA]
¡û
>W141807596
JPOO01000001
Bacteroidota
Arenibacter algicola [JPOO]
919653
919580
-
Gly
GCC
[ENA]
¡û
>W1910857473
NBWU01000005
Bacteroidota
Sediminicola luteus HQA918 [NBWU]
166397
166322
-
Gly
GCC
[ENA]
¡û
>W1911243262
NSGJ01000037
Bacteroidota
Myroides sp. N17-2 [NSGJ]
32606
32679
+
Gly
GCC
[ENA]
¡û
>W1810695758
QLNV01000016
Bacteroidota
Sinomicrobium sp. N-1-3-6 [QLNV]
44378
44451
+
Gly
GCC
[ENA]
¡û
>W1810762860
QQAR01000011
Bacteroidota
Flavobacterium sp. AG291 [QQAR]
102709
102636
-
Gly
GCC
[ENA]
¡û
>W11141037
AENH01000001
Bacteroidota
Riemerella anatipestifer RA-YM [AENH]
112516
112589
+
Gly
GCC
[ENA]
¡û
>W11152360
AEXX01000044
Bacteroidota
Capnocytophaga sp. oral taxon 338 oral taxon 338 str. F0234 [AEXX]
19841
19914
+
Gly
GCC
[ENA]
¡û
>C161042831
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
2856778
2856853
+
Gly
GCC
-
¡û
>C161068876
CP014227
Bacteroidota
Capnocytophaga haemolytica CCUG 32990 [CP014227]
800344
800417
+
Gly
GCC
[Ensembl]
¡û
>W121068189
AJUG01000001
Bacteroidota
Galbibacter orientalis DSM 19592 [AJUG]
1429118
1429043
-
Gly
GCC
[ENA]
¡û
>W121112712
ALNN01000056
Bacteroidota
Capnocytophaga sp. CM59 [ALNN]
30016
30089
+
Gly
GCC
[ENA]
¡û
>W121086454
AKJY01000009
Bacteroidota
Chryseobacterium populi CF314 [AKJY]
23388
23313
-
Gly
GCC
[ENA]
¡û
>W1610850475
LQAQ01000098
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
199150
199225
+
Gly
GCC
[ENA]
¡û
>W1610850477
LQAQ01000098
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
199352
199427
+
Gly
GCC
[ENA]
¡û
>W1610850479
LQAQ01000098
Bacteroidota
Flammeovirga sp. SJP92 [LQAQ]
199618
199693
+
Gly
GCC
[ENA]
¡û
>W1710528363
FNND01000006
Bacteroidota
Capnocytophaga granulosa [FNND]
21645
21572
-
Gly
GCC
[ENA]
¡û
>W1710571442
FOVX01000013
Bacteroidota
Capnocytophaga haemolytica [FOVX]
38304
38231
-
Gly
GCC
[ENA]
¡û
>W1710576800
FPAG01000011
Bacteroidota
Zhouia amylolytica [FPAG]
252
177
-
Gly
GCC
[ENA]
¡û
>W1710596314
FTMM01000005
Bacteroidota
Chryseobacterium sp. RU37D [FTMM]
76320
76395
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK