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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285588 (31 seq.)
>W1710821845
LKTY01000065
Betaproteobacteria
Variovorax paradoxus [LKTY]
15953
16029
+
Met
CAT
[ENA]
¡û
>W1710821900
LKTZ01000093
Betaproteobacteria
Variovorax paradoxus [LKTZ]
15919
15995
+
Met
CAT
[ENA]
¡û
>WENV180022976
FTHB01000154
[FTHB] metagenome; soil
2290
2366
+
Ile2
CAT
[ENA]
¡û
>WENV180759754
ODHY01136877
[ODHY] human metagenome; G_DNA_Buccal mucosa
14
90
+
Ile2
CAT
[ENA]
¡û
>WENV180846878
ODKT01027211
[ODKT] human metagenome; G_DNA_Supragingival plaque
1446
1370
-
Ile2
CAT
[ENA]
¡û
>WENV180964610
ODUO01006618
[ODUO] human metagenome; G_DNA_Supragingival plaque
1340
1416
+
Ile2
CAT
[ENA]
¡û
>WENV170651049
JRYF01000233
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
2347
2423
+
Met
CAT
[ENA]
¡û
>W141558077
JHVQ01000005
Betaproteobacteria
Variovorax sp. URHB0020 [JHVQ]
339510
339434
-
Met
CAT
[ENA]
¡û
>W141816799
JQKD01000018
Betaproteobacteria
Xenophilus azovorans DSM 13620 [JQKD]
5086
5010
-
Met
CAT
[ENA]
¡û
>W2010308716
CABWKX010000004
Betaproteobacteria
Burkholderiales bacterium 8X [CABWKX]
124068
123992
-
Ile2
CAT
[ENA]
¡û
>W2010609225
JABMJG010000001
Betaproteobacteria
Variovorax sp. SG517 [JABMJG]
794869
794793
-
Ile2
CAT
[ENA]
¡û
>W2010717507
JACHYC010000005
Betaproteobacteria
Variovorax sp. Sphag1AA [JACHYC]
102751
102675
-
Ile2
CAT
[ENA]
¡û
>W2010721997
JACIBM010000006
Betaproteobacteria
Variovorax sp. BK658 [JACIBM]
419555
419479
-
Ile2
CAT
[ENA]
¡û
>W2011443064
RJVF01000009
Betaproteobacteria
Comamonas sp. BIGb0124 [RJVF]
604971
605047
+
Ile2
CAT
[ENA]
¡û
>W2011495904
RXFT01000016
Betaproteobacteria
Variovorax guangxiensis DSM 27352 [RXFT]
133615
133539
-
Ile2
CAT
[ENA]
¡û
>W2011496186
RXHT01000003
Betaproteobacteria
Variovorax sp. 369 [RXHT]
16014
16090
+
Ile2
CAT
[ENA]
¡û
>W2011539115
SCNM01000026
Betaproteobacteria
Variovorax sp. 3P27G3 [SCNM]
97091
97015
-
Ile2
CAT
[ENA]
¡û
>W2011578876
SGXQ01000004
Betaproteobacteria
Variovorax sp. BK119 [SGXQ]
66207
66131
-
Ile2
CAT
[ENA]
¡û
>W2011619647
SLVE01000002
Betaproteobacteria
Variovorax sp. BT01 [SLVE]
64200
64276
+
Ile2
CAT
[ENA]
¡û
>W2011620222
SLVO01000005
Betaproteobacteria
Variovorax sp. BK151 [SLVO]
372877
372801
-
Ile2
CAT
[ENA]
¡û
>W2011626042
SLZJ01000004
Betaproteobacteria
Variovorax sp. BK370 [SLZJ]
15794
15870
+
Ile2
CAT
[ENA]
¡û
>W2012048091
VIWE01000024
Betaproteobacteria
Variovorax sp. 1180 [VIWE]
15794
15870
+
Ile2
CAT
[ENA]
¡û
>W1511433146
JUGZ01000018
Betaproteobacteria
Methylibium sp. CF468 [JUGZ]
69732
69808
+
Met
CAT
[ENA]
¡û
>W1610685607
LKTU01000034
Betaproteobacteria
Variovorax paradoxus [LKTU]
15953
16029
+
Met
CAT
[ENA]
¡û
>W1610685751
LKTX01000028
Betaproteobacteria
Variovorax paradoxus [LKTX]
16876
16952
+
Met
CAT
[ENA]
¡û
>W1610685807
LKTY01000065
Betaproteobacteria
Variovorax paradoxus [LKTY]
15953
16029
+
Met
CAT
[ENA]
¡û
>W1610685862
LKTZ01000093
Betaproteobacteria
Variovorax paradoxus [LKTZ]
15919
15995
+
Met
CAT
[ENA]
¡û
>W1710539588
FNVM01000033
Betaproteobacteria
Variovorax sp. NFACC29 [FNVM]
15695
15771
+
Met
CAT
[ENA]
¡û
>W1710557174
FOKS01000033
Betaproteobacteria
Variovorax sp. NFACC26 [FOKS]
16179
16103
-
Met
CAT
[ENA]
¡û
>W1710569269
FOUG01000010
Betaproteobacteria
Variovorax sp. OV329 [FOUG]
168886
168810
-
Met
CAT
[ENA]
¡û
>W1710592641
FRCQ01000003
Betaproteobacteria
Rhizobacter sp. OV335 [FRCQ]
69578
69654
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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