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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285593 (22 seq.)
>W1711626089
MPJE01000067
Chlorobiota
Chlorobium sp. KB01 [MPJE]
20431
20358
-
Ala
TGC
[ENA]
¡û
>W1711626092
MPJE01000070
Chlorobiota
Chlorobium sp. KB01 [MPJE]
60097
60170
+
Ala
TGC
[ENA]
¡û
>W1711626106
MPJE01000115
Chlorobiota
Chlorobium sp. KB01 [MPJE]
2143
2216
+
Ala
TGC
[ENA]
¡û
>W1711626109
MPJE01000115
Chlorobiota
Chlorobium sp. KB01 [MPJE]
112499
112572
+
Ala
TGC
[ENA]
¡û
>C005285
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
104342
104417
+
Ala
TGC
[Ensembl]
¡û
>C006602
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
3050598
3050523
-
Ala
TGC
[Ensembl]
¡û
>C006604
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
2898463
2898388
-
Ala
TGC
[Ensembl]
¡û
>w018044
AASE01000013
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
25048
25125
+
Ala
TGC
[ENA]
¡û
>w007212
AAIK01000026
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [AAIK]
29425
29348
-
Ala
TGC
[ENA]
¡û
>w006970
AAIC01000044
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
3975
4052
+
Ala
TGC
[ENA]
¡û
>WENV181232337
OFEN01000080
[OFEN] coral metagenome; NA
88
161
+
Ala
TGC
[ENA]
¢þ
>WENV181233234
OFES01000017
[OFES] coral metagenome; NA
97537
97610
+
Ala
TGC
[ENA]
¢þ
>WENV181237061
OFFA01024170
[OFFA] coral metagenome; NA
1013
940
-
Ala
TGC
[ENA]
¢þ
>WENV181303885
OFHR01001305
[OFHR] coral metagenome; NA
3326
3253
-
Ala
TGC
[ENA]
¢þ
>C08003624
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
123233
123306
+
Ala
TGC
[Ensembl]
¡û
>C08003626
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
150882
150955
+
Ala
TGC
[Ensembl]
¡û
>C08007682
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
105835
105908
+
Ala
TGC
[Ensembl]
¡û
>C08007684
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
116938
117011
+
Ala
TGC
[Ensembl]
¡û
>C08007692
CP001110
Chlorobiota
Pelodictyon phaeoclathratiforme BU-1 [CP001110]
1186496
1186569
+
Ala
TGC
[Ensembl]
¡û
>WENV170604347
FUWD010388947
[FUWD] metagenome; unknown
124
49
-
Ala
TGC
[ENA]
¢þ
>W09102677
AAIB01000050
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
7515
7590
+
Ala
TGC
[ENA]
¡û
>ENV000304
AF164148
Environmental sample from ENV division of INSDC
393
470
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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